PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022146-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 290aa    MW: 31683.1 Da    PI: 8.2995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022146-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.1e-05262284223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp+C++ F+++ +L+ H  + H
  NNU_022146-RA 262 VCPKCSRGFRDPVSLVEHVERdH 284
                    7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183108.9E-12850No hitNo description
PROSITE profilePS510397.7341056IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.106.3E-101153IPR000058Zinc finger, AN1-type
PfamPF014286.4E-131351IPR000058Zinc finger, AN1-type
SMARTSM001543.7E-41352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.5E-1091158IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.28E-893143No hitNo description
PROSITE profilePS510397.78698151IPR000058Zinc finger, AN1-type
PfamPF014282.6E-7101141IPR000058Zinc finger, AN1-type
SMARTSM001540.06101142IPR000058Zinc finger, AN1-type
SMARTSM003550.025223246IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280225246IPR007087Zinc finger, C2H2
SMARTSM003556.8261284IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.85261289IPR007087Zinc finger, C2H2
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGTPMFPNLG QHCSVDDCKQ IDFLPFTCDR CKQVFCLEHR SYGKHCCPNA DRQDVTVVIC  60
PLCAKGVRLV PDEDPNITWE SHVNTDCDPS NYERATKKKK CPVPGCREPL TFSNTIRCKD  120
CTIEHCLKHR FGPDHKCPGP KKLDAGFPFM GLLRKSQKED SRANRSASAS SSKWATSFLN  180
AASSVRASAE AGMAKLSIAT SQALQMAKDG IGPSSSGSNG QVEECPQCQA KFTSVTALVE  240
HVERVHEKGG NRAGIKKVTI DVCPKCSRGF RDPVSLVEHV ERDHGGTSKA
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241228.10.0PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-140SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1U7Z2180.0A0A1U7Z218_NELNU; zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
STRINGXP_010241228.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-130C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]