PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022197-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 96aa    MW: 11048.2 Da    PI: 3.8931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022197-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding249.2e-081153444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     W+ eE +l+  a +    +   +W+++a+ +g g++++++k ++
    NNU_022197-RA 11 WSWEENKLFEVALAIVDEEnpdRWELVAAAVG-GKSAEEVKKHY 53
                     ****************99999***********.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.8E-5759IPR001005SANT/Myb domain
SuperFamilySSF466897.49E-111065IPR009057Homeodomain-like
PfamPF002493.0E-61153IPR001005SANT/Myb domain
CDDcd001674.84E-51153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MGDIWNVLSG WSWEENKLFE VALAIVDEEN PDRWELVAAA VGGKSAEEVK KHYDILLEDL  60
QYIESGKFDH GFEESQWCLP VECTQSVVSW TDEDQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2111671167RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241465.19e-65PREDICTED: protein RADIALIS-like 4
RefseqXP_010241466.19e-65PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1739e-22RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1U7Z3Y52e-63A0A1U7Z3Y5_NELNU; protein RADIALIS-like 4
STRINGXP_010241465.13e-64(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.24e-24RAD-like 6