PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022214-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family AP2
Protein Properties Length: 839aa    MW: 90754.7 Da    PI: 6.7242
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022214-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.41e-14499550155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  NNU_022214-RA 499 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 550
                    57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.29E-10327466No hitNo description
SMARTSM003804.5E-14328470IPR001471AP2/ERF domain
PROSITE profilePS5103212.879328464IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-7434466IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-7435465IPR001471AP2/ERF domain
CDDcd000189.13E-25499560No hitNo description
SuperFamilySSF541711.37E-17499560IPR016177DNA-binding domain
PfamPF008471.2E-9499550IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-18500559IPR001471AP2/ERF domain
SMARTSM003801.5E-33500564IPR001471AP2/ERF domain
PROSITE profilePS5103219.045500558IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 839 aa     Download sequence    Send to blast
MASMNNWLAF SLSPQELPSQ SQSHAQPTVS RLGYNSDEVS GTDVSGDCFD LTSDSSAPSL  60
NIPALRPDGT FGILEALNRS NQQQPQDWNI KVLGMNCNTN FKTNSELSML IGGSSSNHNL  120
DHEEPKLEDF LGGHSFTDHE QKLHGCNGIT RTTYDSTTGD YMFSNCSLQL PSASTAATSS  180
GGASGGTMSN NPNISNNSNN SNNNNNNNSI GLSMIKTWLR NQPAGAQPEN KNDGGNSCGS  240
TATVTNGGGT LTSAQNLSLS MSTASQSNSA LPLLAATMGG SASGTGNGAE CSSSDNKQKV  300
TTAFDNQTGA VEAVPRKSID TFGQRTSIYR GVTRHRWTGR YEAHLWDNSC RREGQTRKGR  360
QGISLHYTSN TETFSTFLLL PSTTLSVIYM LIYLFLLFPR SLSLDVDLIK LYCSLSGPLK  420
SGSLICLFLH FFSTGGYDKE EKAARAYDLA ALKYWGTTTT TNFPISNYEK ELEEMKHMTR  480
QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA  540
YDIAAIKFRG LNAVTNFDMS RYDVNSIMES STLPIGGAAK RLKEAEQTET SVDGRRTDDE  600
NMTSQLTDGI TNYGTNLNHH GWPTIAFQQA QPLSMHYPYG HQQRGWCKQE QDVGVAHNFH  660
DFHHLQLGNN THNFFQPSSV MHNLIGLGSA SSMEHSSGSN SVIYSSGGGS GSGGGGSGGN  720
SSFQGVVGGN GNGFVMPIGT MMAEQTNNNN QGSNFGEAEV KQLGYDHNML TTPNNDPFQG  780
RNLYYLSQPS SVSVLKSSGY DQGSSCNNWL PTAVQSLTPR SNNLAVCHGA PVFTVWNDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241511.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8L3U38e-91BBM1_BRANA; AP2-like ethylene-responsive transcription factor BBM1
TrEMBLA0A068U6P30.0A0A068U6P3_COFCA; Uncharacterized protein
STRINGXP_010241511.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10510.31e-97AINTEGUMENTA-like 6