PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022277-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 274aa MW: 30419.7 Da PI: 9.4706

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022277-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.8	0.00022	226	260	15	54
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+++ + L+ ++P k +s +++L +Av+Y+ksL NNU_022277-RA 226 RMKKMMKALKGIVPGG-----KQMSTVAVLDEAVRYLKSL 260 6778888888888876.....67***************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.112	211	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.99E-6	220	265	No hit	No description
SMART	SM00353	3.5E-5	220	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.75E-7	223	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-5	223	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MYIVVNLKRY RTVKKVGKIT MNVRIIACYQ LMQVCQMQSD QHIYPKKVVA PLAYQVSSGY 60 MYNAPVAPGL GSTLPPGAKQ TTSFHGFEFQ PSEVFPKNFI IFDQTDNRSR IMFHPTLANK 120 FNCPGFDICG VNTDENGVRN RDNGEFSTPL KEDTEDINVL LSLEEEEEED RDDVSTARTN 180 GSCGSSSPDS CSTYGSKTSK RRLSSSIQKS FSGSGSSCNS ESKRLRMKKM MKALKGIVPG 240 GKQMSTVAVL DEAVRYLKSL KVEVKKLGIG NFKN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241336.1	1e-177	PREDICTED: transcription factor bHLH144-like
Refseq	XP_010241337.1	1e-177	PREDICTED: transcription factor bHLH144-like
TrEMBL	A0A1U7YQX4	1e-176	A0A1U7YQX4_NELNU; transcription factor bHLH144-like
STRING	XP_010241336.1	1e-177	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29950.2	1e-13	bHLH family protein