PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022306-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

NF-YA

Protein Properties

Length: 163aa MW: 18402.9 Da PI: 10.2419

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022306-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	108.4	5.7e-34	68	124	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq+Rak+e+e+kl +ksrkpylheSRh hA+rR+Rg+gGrF NNU_022306-RA 68 EEPVYVNAKQYHGILRRRQSRAKAESENKL-IKSRKPYLHESRHLHAMRRARGCGGRF 124 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.0E-38	66	127	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	39.495	67	127	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.6E-29	69	124	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.6E-24	70	92	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	72	92	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.6E-24	101	124	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
MRSVYRTCLG TIRIDRYVAK FLNLAQAVYP YPDPYYRSIF APYGAQPMMH PHLMGIHQAG 60 VPLPLDAEEP VYVNAKQYHG ILRRRQSRAK AESENKLIKS RKPYLHESRH LHAMRRARGC 120 GGRFLNAKSS EKQQSKGASG DEAQSDANLD SNKIQQASSE TAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	3e-22	68	131	2	65	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241195.1	6e-97	PREDICTED: nuclear transcription factor Y subunit A-7 isoform X2
Swissprot	Q84JP1	7e-53	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A1U7Z1Z3	1e-95	A0A1U7Z1Z3_NELNU; nuclear transcription factor Y subunit A-7 isoform X2
STRING	XP_010241193.1	9e-96	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	3e-55	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]