PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022363-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 428aa    MW: 46686.1 Da    PI: 5.2517
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022363-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.6e-19253303256
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     y+GVr+++ +g+WvAeIr p++   r+r++lg+f+tae+Aa a++ a+ +l+ge
  NNU_022363-RA 253 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEDAAFAYDTAAYRLRGE 303
                    59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.09E-33252312No hitNo description
PROSITE profilePS5103223.472253310IPR001471AP2/ERF domain
SMARTSM003808.6E-37253316IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-23253311IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-32253311IPR001471AP2/ERF domain
PfamPF008472.3E-12254303IPR001471AP2/ERF domain
PRINTSPR003678.6E-11254265IPR001471AP2/ERF domain
PRINTSPR003678.6E-11276292IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MASYLQNELP FNVQGMATIA RFLSHSNMWG ELWETAYCDG DDGGAGGASS SSSLNQLFSS  60
PESSSSVDEA VASGLNNNNV AEFTTPIMVP EQQICPISSC VTSASNSLSS PQGHSDVNGS  120
FSTPVNFIES FPELSQAQAS TAPSPPTAPN FPSLSLFLPE PASIEPTTSI SCNNQRSLPM  180
LSSSNPFYNV SDLHQIQLQP GLEWLRINQS LMSRASKSSG DHLLGATKTQ PMKYSGRRMQ  240
DHQQKTFSSP TKLYRGVRQR HWGKWVAEIR LPRNRTRVWL GTFDTAEDAA FAYDTAAYRL  300
RGENAHLNFP DLKHQLKLNS LIGSTAALLE AKLKAFYEGI QPQKKPTNPP PSPPSSETLT  360
SENTTVDTLD QKLSRRECSF DLEKSAGSEV VESKKTVGLL SDVDAVPLSR MPSLDMDMIW  420
DSLPVADS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-22252310160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241385.10.0PREDICTED: ethylene-responsive transcription factor ERF062-like
TrEMBLA0A1U7YN960.0A0A1U7YN96_NELNU; ethylene-responsive transcription factor ERF062-like
STRINGXP_010241385.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-51ERF family protein