PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022503-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GeBP
Protein Properties Length: 316aa    MW: 36229.8 Da    PI: 5.5012
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022503-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57372.11e-2246137397
         DUF573   3 fqrlwseeDeivlLqGlidfkaktgk..spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiW 96 
                    f+r++seeDei lL+++++  ++ ++  sp +  + +++ vk+s+s+++s++ql++K+r+L+ K+ k+v++        ++++h+++ fe+s++iW
  NNU_022503-RA  46 FKRVFSEEDEIQLLKAFLEISKTAKAseSPASVATILFDRVKDSLSSEFSRTQLIDKLRKLRLKYSKQVEN-----MSFIKTPHERDLFEISHRIW 136
                    89******************77766645677788999********************************99.....667899************** PP

         DUF573  97 g 97 
                    g
  NNU_022503-RA 137 G 137
                    8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.1E-2046137IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MSSPSETPTS KRKKHSPSKD PAEKRRKSSS KPSGIASPEE RKSIPFKRVF SEEDEIQLLK  60
AFLEISKTAK ASESPASVAT ILFDRVKDSL SSEFSRTQLI DKLRKLRLKY SKQVENMSFI  120
KTPHERDLFE ISHRIWGEEP EKEQEHAEYS AEGEEEDKEE EEEEDKEEEE EEEELPREVT  180
RKEKAKSKTL KKGKEKPKRK VLTTPIENGE AVVAEEPAEK GLTVGNDEQT KNGETVQDTK  240
VSLRKFPYVV EEMLRLPGNA MVREGLRCVD ASLVKRMNEE WRLQQIAEAE VLAKRAELIR  300
LHSKRILEAI VSSSPE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11126RKKHSPSKDPAEKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241658.10.0PREDICTED: probable transcription factor At5g28040
TrEMBLA0A1U7YUY10.0A0A1U7YUY1_NELNU; probable transcription factor At5g28040
STRINGXP_010241658.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.18e-19DNA-binding storekeeper protein-related transcriptional regulator