PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022609-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

TCP

Protein Properties

Length: 217aa MW: 23396.4 Da PI: 8.9387

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022609-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.7e-37	32	126	3	81
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssaseceaesssss 81 ++k+++ ++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++tieWLl+qa+p+i+++tgt ss+s + ++ssss+ NNU_022609-RA 32 PRKSSSRDRHTKVNGRGRRIRMPALCAARIFQLTRELGHRSDGETIEWLLRQAEPSIIAATGTgtvpapsestptgvmppA-SSPSTSAPVSSSST 126 799************************************************************655444443333333221.11111112222222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.3E-30	36	116	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.125	37	91	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 217 aa Download sequence Send to blast
MGSELILRNS SQPGEQNTVS TRDVSKIQLT LPRKSSSRDR HTKVNGRGRR IRMPALCAAR 60 IFQLTRELGH RSDGETIEWL LRQAEPSIIA ATGTGTVPAP SESTPTGVMP PASSPSTSAP 120 VSSSSTSISS AIKARPVAAV PENHRVPTGF LAVSSFETAP PICRLDLCQP PVGLEFPSNG 180 YRHMPFTAML LQPTSEGEEQ PHPPPPPQQQ QEEVNKH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241853.1	1e-156	PREDICTED: transcription factor TCP11
Swissprot	Q9SJK7	2e-41	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A1U7YVF8	1e-155	A0A1U7YVF8_NELNU; transcription factor TCP11
STRING	XP_010241853.1	1e-155	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69690.1	1e-37	TCP family protein