PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022633-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 690aa    MW: 76694.6 Da    PI: 5.3714
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022633-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14491537455
                    HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                    +h   Er+RR+++N++f  Lr+l+P+ +      K++Ka+iL  ++eY+k+L+
  NNU_022633-RA 491 NHVLSERKRREKMNEKFLILRSLVPSiS------KVDKASILADTIEYLKDLE 537
                    78999*********************66......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.5E-4020209IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.729487536IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-18490554IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.14E-15490541No hitNo description
Gene3DG3DSA:4.10.280.106.1E-18491548IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-11491537IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-15493542IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MCWAMGAGLQ NQEGVPENHL SKQLAFAVRS IQWSYAIFWS ISTRQQGVLE WGDGYYNGNI  60
KTRKTIQHME LNADQMGLRR SEQLRELYES LSAGDTIQQA RRPSASLSPE DLTDAEWQTL  120
EAGRVKGGIW IPLQKTDNTI DNYLLLPGRA LANGQPIWLC NAHYADSKVF SRSLLAKTVI  180
CFPFLGGVVE LGVTELVLED PSLIQHVKTS CLEFPKPICS EQSTSSPQNA DNEENPTVKH  240
EVVDSMALDK LNPVSECEVQ PEIAPQEALP PSSPNMPKEE IEFEQDGVEE LVGVKSGSPD  300
DSSNEYKANQ PTEESFMLEG VNAGTSRAHR WQAMDDEFSN CMHGSINLSD SISQTFVNPQ  360
KVVSSPKGER TNNLQLQDLQ ECNHTKLRSL DLGTDDLHYT RTLSAIFKNS HPLNVSPNSF  420
HGGNHESSFK SWVKGGFIDA QKVKIGTPQK ILKTILFEVA LLHGGSSLKS REEITGKVGI  480
CRLEGDYVGM NHVLSERKRR EKMNEKFLIL RSLVPSISKV DKASILADTI EYLKDLERRI  540
EELESCKELP EFEARTRRKH PDMVERTSDN YGNNDISNGK KPSINKRKAS DIDESEPELN  600
QVLSTDCLAA DVTVSMIGKE VLIEIRCPWR DCLFLDIMDA VSNLHLDAHT VQSSTVDGIL  660
SVTLKSKFRG AAVASAGMVK QALGRVISKG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1495500ERKRRE
2496501RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241898.10.0PREDICTED: transcription factor GLABRA 3-like isoform X1
TrEMBLA0A1U7YSA10.0A0A1U7YSA1_NELNU; transcription factor GLABRA 3-like isoform X1
STRINGXP_010241898.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-161bHLH family protein