PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022682-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 208aa    MW: 24439.5 Da    PI: 7.6237
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022682-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1032.5e-32281302102
                    HHHHHHHHHCTG...........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
   HSF_DNA-bind   2 Flkklyeilede...........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                    Fl k+y++le+e            +k+++sw+ +gnsfvv+ +e+f++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++         weF+h++F
  NNU_022682-RA  28 FLCKTYDLLEEEeeeeldhdnscCNKRVVSWNGEGNSFVVWSPEDFSQFILPRYFKHKNFSSFIRQLNTYGFKKSATDR---------WEFHHDKF 114
                    99********66667777777778899************************************************9999.........******** PP

                    XXXXXXXXXXXXXXXX CS
   HSF_DNA-bind  87 kkgkkellekikrkks 102
                    +kg+++ll +i rkk 
  NNU_022682-RA 115 QKGRRDLLVEITRKKC 130
                    *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.2E-3518123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.35E-2624128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.9E-4024128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.6E-2928128IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MATEPNQLVI RQTASHHQSP RTGSPAPFLC KTYDLLEEEE EEELDHDNSC CNKRVVSWNG  60
EGNSFVVWSP EDFSQFILPR YFKHKNFSSF IRQLNTYGFK KSATDRWEFH HDKFQKGRRD  120
LLVEITRKKC EPSVFPAFLE ASKRDYKVTA ASVDENKHLL LEENKNLRKE NSELLMQISH  180
FKALETKLLD CLFQHTGSHN KTREFVRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B2e-16261282104Putative transcription factor
5d5x_B2e-16261282104Putative transcription factor
5d5x_E2e-16261282104Putative transcription factor
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242017.11e-155PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A1U7Z3Z41e-154A0A1U7Z3Z4_NELNU; heat stress transcription factor B-2a-like
STRINGXP_010242017.11e-154(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-32heat shock factor 4