PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022718-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 251aa    MW: 28601.2 Da    PI: 5.3751
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022718-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind43.21.1e-1383131250
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--H CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnf 50 
                    Fl+k+++++e+++++++isw++n ++fvv+++ +fa+++L++yFk + f
  NNU_022718-RA  83 FLMKTHKLVENANTDDVISWNDNDTTFVVWKSADFARDLLSNYFKYNDF 131
                    9********************************************8764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004152.0E-679243IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-1380131IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467856.39E-1180132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.9E-1083131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-583106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-5121133IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MIFDDIRAEV NGFVEFCLSV GVGTWNRYKD GCKHIKSDLN QEGIYRIFQK VDVCSSSGVV  60
KGKRGALRRG AGVFGWVCVP APFLMKTHKL VENANTDDVI SWNDNDTTFV VWKSADFARD  120
LLSNYFKYND FLRQRFGDQN SSDTNTRMVD YMLNNPLPHQ MSLGFCSATS LDRLSFSEVT  180
QFTDFGPKLA VNQAKLSDEE NGIDQGYFLK FLVLNDKLQD QSLFINPPPI ANEEEKFKAY  240
SDQTFEFHQG K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.19e-20heat shock transcription factor B4