PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022723-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 432aa    MW: 47407.6 Da    PI: 6.8907
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022723-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.81.3e-18204253255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  NNU_022723-RA 204 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAYKLRG 253
                    59******9.**********955...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.50E-32203263No hitNo description
SMARTSM003802.7E-36204267IPR001471AP2/ERF domain
PROSITE profilePS5103222.576204261IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-22204262IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-31204262IPR001471AP2/ERF domain
PfamPF008476.5E-12205253IPR001471AP2/ERF domain
PRINTSPR003678.8E-11205216IPR001471AP2/ERF domain
PRINTSPR003678.8E-11227243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MANVNSRSTS KQGCGETQDK GKNPVSLEGR QWMPVFEGAS ISPRPLKKIR SPERQNPCNS  60
SVSITDQATH VSLFSSPSIS TVTTTDTVIT QPSSRIVFPF AFDGSQHTEM TNHFGTTPFT  120
LFHQPHPQHQ QMISFIPQNH GMGYYPPFFI GEGQSTEQQQ QLLRYWSDAL NLSPRGRTMM  180
MNRLGQHGRS LFRPPAPPGS TTKLYRGVRQ RHWGKWVAEI RLPRNRTRLW LGTFDTAEDA  240
ALAYDREAYK LRGDHARLNF PELFLGRDGA ATAPSSSCSS PPTPNANPHQ PRQQQPLPPQ  300
PHSESQHVET APMPPNNPSD DGPEKPNFQG NSPAGMGLGS SGLTDAQALT PSASVTGEGI  360
SASSELVWGD MQEAWFNAIP AGWGPGSPVW DDIDTINNLL LQSHLAMPTS SQQELQATDF  420
QNQPDSPTPS PS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-21203261160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242006.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A1U7Z5C60.0A0A1U7Z5C6_NELNU; ethylene-responsive transcription factor ERF053-like
STRINGXP_010242006.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-47ERF family protein