PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022759-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

WRKY

Protein Properties

Length: 296aa MW: 32102.4 Da PI: 6.2994

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022759-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.6	3e-29	75	133	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ ++itY eHnh+ NNU_022759-RA 75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTRLVITYACEHNHP 133 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	31.582	69	135	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	2.0E-30	69	135	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-25	72	135	IPR003657	WRKY domain
SMART	SM00774	1.4E-33	74	134	IPR003657	WRKY domain
Pfam	PF03106	1.8E-24	76	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MEGRFSNPFV GEQVGVRITP KSGGESPFSG VISEGKVTST SSPKRSRRSV QKRVVSVPIK 60 DVDGSRLKGE GAPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSSKGCPARK QVERSRVDPT 120 RLVITYACEH NHPWPASRNS NSTASHSNTT ATTSATRPAV VSPANGSSSP PSTTTENDIS 180 PKFPPEEPVV FSDRPAMEPD DSKFGDLGEE SMITSDDFSW FSDVPSTSPA VLESTTYPGS 240 SSGRADVAMI FQMREEDESL FADLGELPEC SLVFRRGIFE QDEESRRCSP VCGSTG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	52	135	6	79	Disease resistance protein RRS1
5w3x_D	1e-20	52	135	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00167	DAP	Transfer from AT1G29280	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG983333	4e-39	HG983333.1 Humulus lupulus mRNA for WRKY transcription factor (Wrky3 gene), clone 3323.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242109.1	0.0	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	7e-73	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A1U7YW20	0.0	A0A1U7YW20_NELNU; probable WRKY transcription factor 65 isoform X1
STRING	XP_010242109.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	3e-61	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]