PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022792-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HSF
Protein Properties Length: 446aa    MW: 51114.7 Da    PI: 5.0076
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022792-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.12.2e-36141052102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+ye+++d+++++++sws n++sf+v+++ ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+++ll++i
  NNU_022792-RA  14 FLTKTYEMVDDPSTNSVVSWSPNNRSFIVWNPPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDQ---------WEFANEDFIRGQRHLLKNI 100
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                     r+k 
  NNU_022792-RA 101 YRRKP 105
                    **985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.6E-40798IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6410103IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.62E-3611103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-3214103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-211437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-215264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDGSQGSSNV PPPFLTKTYE MVDDPSTNSV VSWSPNNRSF IVWNPPEFSR DLLPKYFKHN  60
NFSSFVRQLN TYGFRKVDPD QWEFANEDFI RGQRHLLKNI YRRKPVHSHS QQNQGNSTGL  120
SESERQDLEE EIERLKHEKS MLVMDLQKHT QEHQGIELQM LSLEQHLHKL QHHQRQIISF  180
LSQILQKPGF DSNLMQEPEN YKKKRRLPKL DYLYDEADVE ENQVLTFQKE KSDVISMPVI  240
DIEPFERLES SLNSWENFLQ DVGQASGEEM SPVGAVLQPY TVVFTEIDAS SGDPNIDVET  300
QSPKLHPSSP HSRDIYSSSE LAGSRSHSES PVISSVQFSA DLQSRASGID MNSKPAAASE  360
VLESKEQVVG MKTSAVPKRV NDVFWEQFLT ETPGSSDTQE VQSEIRDTDV RKNENKPTDH  420
GKLWLNSKPV DYLTEQMGYL TPSERM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-28310319129Heat shock factor protein 1
5d5v_B2e-28310319129Heat shock factor protein 1
5d5v_D2e-28310319129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201205KKKRR
2201206KKKRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242159.10.0PREDICTED: heat stress transcription factor A-4b-like
TrEMBLA0A1U7YW540.0A0A1U7YW54_NELNU; heat stress transcription factor A-4b-like
STRINGXP_010242159.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.12e-95heat shock transcription factor A4A