PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022888-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32632.7 Da    PI: 6.6714
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022888-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.16.4e-1881134356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  NNU_022888-RA  81 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 134
                    456899***********************************************9 PP
2HD-ZIP_I/II1291.9e-4180170191
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k++n++L++++++L++e+
  NNU_022888-RA  80 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYELLKRQFEAVKSDNDALQAQNKKLHAEI 170
                    69**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1971138IPR009057Homeodomain-like
PROSITE profilePS5007117.21676136IPR001356Homeobox domain
SMARTSM003891.8E-1779140IPR001356Homeobox domain
CDDcd000869.79E-1681137No hitNo description
PfamPF000462.8E-1581134IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.3E-1983143IPR009057Homeodomain-like
PRINTSPR000311.1E-5107116IPR000047Helix-turn-helix motif
PROSITE patternPS000270111134IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5116132IPR000047Helix-turn-helix motif
PfamPF021835.1E-15136176IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MTCNGMAFFP ANFMLQTPHH EDDRRPPTSL NPILQQCTPQ NFHGVASFLG KRSMSFSGID  60
VCEDTNGDEE LSDDGSQMGE KKRRLNMEQV KTLEKNFELG NKLEPERKMQ LARALGLQPR  120
QIAIWFQNRR ARWKTKQLEK DYELLKRQFE AVKSDNDALQ AQNKKLHAEI LALKSREPTE  180
SINLNKETEG SCSNRSENSS DINLDISRTP AIDSPLSSHH PSRPLFPSSI VRPASVAQLL  240
QNSSRSDLHC PKMEQTVQEE SFCNMFCGID EQPGFWPWPE QHHFH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1128136RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242413.10.0PREDICTED: homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC031e-113ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1U7YTG20.0A0A1U7YTG2_NELNU; homeobox-leucine zipper protein ATHB-13
STRINGXP_010242413.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-109HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]