PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022939-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 90aa    MW: 10739.7 Da    PI: 10.8268
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022939-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.64.4e-135362556
                   --HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox 25 psaeereeLAkklgLterqVkvWFqNrRakek 56
                   +  +e++eLAk l+L+ rq+ vWFqNrRa+ k
  NNU_022939-RA  5 LVLKEKTELAKGLNLKPRQIEVWFQNRRARTK 36
                   667899************************98 PP
2HD-ZIP_I/II82.46.6e-275702490
    HD-ZIP_I/II 24 LeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90
                   L  ++K+ela+ L+l+prq++vWFqnrRARtk+kq+E+  e+ k++++ l+een+rL+++  eLr +
  NNU_022939-RA  5 LVLKEKTELAKGLNLKPRQIEVWFQNRRARTKSKQTEVGLEYFKQCCEILSEENRRLRRQLVELR-A 70
                   66789**********************************************************99.4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007112.746138IPR001356Homeobox domain
PfamPF000462.1E-10536IPR001356Homeobox domain
SuperFamilySSF466894.71E-11746IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.9E-12841IPR009057Homeodomain-like
CDDcd000867.91E-7839No hitNo description
PROSITE patternPS0002701336IPR017970Homeobox, conserved site
SMARTSM003401.9E-143881IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MKVHLVLKEK TELAKGLNLK PRQIEVWFQN RRARTKSKQT EVGLEYFKQC CEILSEENRR  60
LRRQLVELRA LSRPSQMYMQ VPATNLVIQI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13038RRARTKSKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242462.12e-51PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
RefseqXP_010242463.12e-51PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X1
RefseqXP_019051454.12e-51PREDICTED: homeobox-leucine zipper protein HAT14-like isoform X2
SwissprotA2YW031e-30HOX27_ORYSI; Homeobox-leucine zipper protein HOX27
TrEMBLA0A1U7YQU24e-50A0A1U7YQU2_NELNU; homeobox-leucine zipper protein HAT14-like isoform X1
TrEMBLA0A1U8PY334e-50A0A1U8PY33_NELNU; homeobox-leucine zipper protein HAT14-like isoform X2
STRINGXP_010242462.16e-51(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-32homeobox from Arabidopsis thaliana