PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022994-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 202aa MW: 23144.2 Da PI: 8.8333

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022994-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	116.1	2.2e-36	13	112	2	101
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 CaaCk++r+kC+k+C+la+yfpa+ ++f nvhkl+G++n++++l+++++ +r++a++s+++eAear dPv G++g+++kl +q++ k+el+ + NNU_022994-RA 13 CAACKHQRKKCKKGCPLAQYFPAKLYQDFVNVHKLYGVANIVRILRNIEPYQRKAAAQSIMFEAEARRVDPVLGSFGLVHKLISQIDAYKKELHII 108 **********************************************************************************************99 PP DUF260 98 keel 101 +++l NNU_022994-RA 109 NQQL 112 9985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.896	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-33	13	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MNEKSTGHAG HGCAACKHQR KKCKKGCPLA QYFPAKLYQD FVNVHKLYGV ANIVRILRNI 60 EPYQRKAAAQ SIMFEAEARR VDPVLGSFGL VHKLISQIDA YKKELHIINQ QLSYYRQQEE 120 SQKLQQLRWF QIASSSSLPI NAYNGGSMEN FGDDQTANAY TSFILQEFED IKPPFDFNSS 180 DQEINVYFNN MPPANNNVQV FR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-26	5	119	4	118	LOB family transfactor Ramosa2.1
5ly0_B	8e-26	5	119	4	118	LOB family transfactor Ramosa2.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242281.1	1e-151	PREDICTED: LOB domain-containing protein 25-like
TrEMBL	A0A1U7Z608	1e-150	A0A1U7Z608_NELNU; LOB domain-containing protein 25-like
STRING	XP_010242281.1	1e-151	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	6e-32	LOB domain-containing protein 22