PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_022998-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 503aa MW: 56948 Da PI: 9.5218

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022998-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.5	1.3e-09	326	371	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h + Er+RR+++N++f L +llP+ K +K ++L + eY+ L NNU_022998-RA 326 NHIISERKRRAKLNERFRALSSLLPPG-----SKKNKLSVLSSTREYLIAL 371 7999*******************95.....4999999*****98655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.049	322	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.88E-14	322	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.82E-9	325	375	No hit	No description
Pfam	PF00010	2.1E-7	326	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-13	326	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.6E-11	328	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 503 aa Download sequence Send to blast
MDSVFFLGQE DRTSFLRAIA QSVGCSYCCL WFYYPHPFKA TSPAPPLEVL PEGSLKITGY 60 HSATSIIGLA FKEGIPYMEL NELELQSRAS TETQRRFYRE ARIKAAAFMG CKSGEIEIGT 120 MNPTQINMEM EIRKFFPEDL NQQLQFRELL HHQQDQNRSS SSLSSMSVSS PEYSSLVFSI 180 PSTCSMPKTL KEAPVKKAIL PTPTETMPVL QQQTTQPFQR LSSIRFPSWE SDDAAMTRAM 240 LAVISSPSTS SSSHHHQLQS HGYKLSQHKS AFKDYISSLA PIVNVSITAN IRRNNMQKRA 300 IAFFKSLYLK RNEEEMQATR QTSNLNHIIS ERKRRAKLNE RFRALSSLLP PGSKKNKLSV 360 LSSTREYLIA LKAQVLQLQQ QNRLPEGRLV SAAREASEED NASPNERIDI RVVHAAESTS 420 EERQVEVRVT VIQDCDLLEL GIRLLEFIKQ TRVASLVSME ANTQMQQMGS FKRLTLKLNI 480 KGSEWDEATF RESIARIVAN LPT

Sequence ? help Back to Top

Protein Sequence Length: 503 aa Download sequence Send to blast

MDSVFFLGQE DRTSFLRAIA QSVGCSYCCL WFYYPHPFKA TSPAPPLEVL PEGSLKITGY  60
HSATSIIGLA FKEGIPYMEL NELELQSRAS TETQRRFYRE ARIKAAAFMG CKSGEIEIGT  120
MNPTQINMEM EIRKFFPEDL NQQLQFRELL HHQQDQNRSS SSLSSMSVSS PEYSSLVFSI  180
PSTCSMPKTL KEAPVKKAIL PTPTETMPVL QQQTTQPFQR LSSIRFPSWE SDDAAMTRAM  240
LAVISSPSTS SSSHHHQLQS HGYKLSQHKS AFKDYISSLA PIVNVSITAN IRRNNMQKRA  300
IAFFKSLYLK RNEEEMQATR QTSNLNHIIS ERKRRAKLNE RFRALSSLLP PGSKKNKLSV  360
LSSTREYLIA LKAQVLQLQQ QNRLPEGRLV SAAREASEED NASPNERIDI RVVHAAESTS  420
EERQVEVRVT VIQDCDLLEL GIRLLEFIKQ TRVASLVSME ANTQMQQMGS FKRLTLKLNI  480
KGSEWDEATF RESIARIVAN LPT

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019051426.1	0.0	PREDICTED: putative transcription factor bHLH041
TrEMBL	A0A1U8Q0E3	0.0	A0A1U8Q0E3_NELNU; putative transcription factor bHLH041
STRING	XP_010242283.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-39	bHLH family protein