PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023122-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 189aa    MW: 21261.4 Da    PI: 8.3312
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023122-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.13.1e-184396356
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   k+++++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  NNU_023122-RA 43 KKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 96
                   456899***********************************************9 PP
2HD-ZIP_I/II128.33.2e-4142130189
    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                    ekkrrl+ eqvk+LE++Fe  +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye Lkr+++a+k++n++L++++++L++
  NNU_023122-RA  42 EKKRRLNMEQVKTLEKNFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYELLKRQFEAVKADNDALQAQNKKLHT 130
                    69*************************************************************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.37E-1935100IPR009057Homeodomain-like
PROSITE profilePS5007116.9733898IPR001356Homeobox domain
SMARTSM003891.8E-1741102IPR001356Homeobox domain
CDDcd000867.06E-164399No hitNo description
PfamPF000461.4E-154396IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1945105IPR009057Homeodomain-like
PRINTSPR000315.9E-66978IPR000047Helix-turn-helix motif
PROSITE patternPS0002707396IPR017970Homeobox, conserved site
PRINTSPR000315.9E-67894IPR000047Helix-turn-helix motif
PfamPF021831.4E-1298131IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MPVSPMGIIM GLSSCTPRLL VLDGSSGECN VCRSEATSVT GEKKRRLNME QVKTLEKNFE  60
LGNKLEPERK MQLARALGLQ PRQIAIWFQN RRARWKTKQL EKDYELLKRQ FEAVKADNDA  120
LQAQNKKLHT EAIPGHKEKE EEGVQPERAS LKLEAACTSK EPLPSPGIKT TDGSDAEAIL  180
EERHTIIDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19098RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242675.26e-61PREDICTED: homeobox-leucine zipper protein ATHB-13-like, partial
SwissprotQ8LC033e-51ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLA0A1U7YR941e-59A0A1U7YR94_NELNU; homeobox-leucine zipper protein ATHB-13-like
STRINGVIT_14s0108g00390.t012e-56(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-53HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  3. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  4. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]