PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023156-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 252aa    MW: 29093.9 Da    PI: 6.5089
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023156-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.11e-1524113398
                    EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
             B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                    +v++ps++ k+    +p  f ++  g++  + + +l++ +  sW+vk++   ++s+ ++++kGW++Fvk+++L +gD +vF+++gr  f   v++f
  NNU_023156-RA  24 TVFSPSSSIKL---EIPPAFNRHLAGESWID-EARLNSCK-GSWDVKVRGsGRSSEDMYFEKGWEDFVKEHKLHVGDLLVFQHHGRLVF--DVMIF 112
                    56666666665...59999997777777776.88877755.59*****774555555*************************9887666..78877 PP

                    - CS
             B3  98 r 98 
                    +
  NNU_023156-RA 113 D 113
                    7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.94E-1717122IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-1717117IPR015300DNA-binding pseudobarrel domain
CDDcd100172.60E-1520113No hitNo description
SMARTSM010193.8E-1222115IPR003340B3 DNA binding domain
PfamPF023622.5E-1322112IPR003340B3 DNA binding domain
PROSITE profilePS5086311.84361115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MPSGNPQNLK MLKLAPPHKR CFYTVFSPSS SIKLEIPPAF NRHLAGESWI DEARLNSCKG  60
SWDVKVRGSG RSSEDMYFEK GWEDFVKEHK LHVGDLLVFQ HHGRLVFDVM IFDPSACQKE  120
YHPAFIGEER KQEETMKRQE EIIHPNHSNS NGTRKRPLEE EEEKLERRQR PFFNTTINAT  180
NIISEYLVFG PHCIYQQLFF FREEGTLSCR QCNAFWDGIE RKAEERVVTL TALGTQSSEE  240
DVVVALLVAT CG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019051497.11e-112PREDICTED: B3 domain-containing protein Os03g0212300-like
TrEMBLA0A1U8PY731e-111A0A1U8PY73_NELNU; B3 domain-containing protein Os03g0212300-like
STRINGXP_010242757.11e-137(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.11e-13B3 family protein