PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023183-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family LSD
Protein Properties Length: 99aa    MW: 10754.6 Da    PI: 8.5724
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023183-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD130.75.1e-102953125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg Cr+lLsYPrG ++V+Ca C tV
  NNU_023183-RA 29 CGTCRCLLSYPRGVRYVKCAQCRTV 53
                   ************************9 PP
2zf-LSD144.32.8e-146791125
        zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                   Cg+C +lL+YP+GApsV+C++C+ V
  NNU_023183-RA 67 CGNCSVLLMYPYGAPSVKCSCCHSV 91
                   ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.5E-122655IPR005735Zinc finger, LSD1-type
PfamPF069438.2E-82953IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.0E-116493IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-126791IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MGSHGHLTDA PPPRRQTTPP SPEMGQMVCG TCRCLLSYPR GVRYVKCAQC RTVNLLLEAH  60
QVGQVKCGNC SVLLMYPYGA PSVKCSCCHS VTEIGRPFS
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242920.17e-65PREDICTED: protein LOL2 isoform X2
SwissprotO654263e-32LOL2_ARATH; Protein LOL2
TrEMBLA0A1U7YRT62e-63A0A1U7YRT6_NELNU; protein LOL2 isoform X2
STRINGXP_010242919.14e-63(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.12e-33lsd one like 2