PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023191-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HSF

Protein Properties

Length: 192aa MW: 22483.6 Da PI: 9.7335

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023191-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	103.1	2.4e-32	27	126	2	102
HHHHHHHHHCTG........GGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXX CS HSF_DNA-bind 2 Flkklyeilede........elkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkg 89 Fl k+y++le+e + k+++sw+++gn f v+ +e+f++ +Lp+yFkh+nf+SF+RQLn+YgFkk+ +++ weF+h++F+kg NNU_023191-RA 27 FLCKTYDLLEEEeafdhesrRCKRIVSWNSEGNGFGVWCPEDFSQFILPRYFKHNNFSSFIRQLNTYGFKKSASDR---------WEFQHEKFQKG 113 99******555555555599**********************************************9999.........******* PP XXXXXXXXXXXXX CS HSF_DNA-bind 90 kkellekikrkks 102 +++ll +i rkk NNU_023191-RA 114 RRQLLVEITRKKC 126 ********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	5.1E-34	17	119	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-40	23	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	7.21E-26	23	124	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.0E-28	27	124	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-9	73	85	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.9E-9	86	98	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MAREPNQVIG GSTSHQSTPR TRSPAPFLCK TYDLLEEEEA FDHESRRCKR IVSWNSEGNG 60 FGVWCPEDFS QFILPRYFKH NNFSSFIRQL NTYGFKKSAS DRWEFQHEKF QKGRRQLLVE 120 ITRKKCEPSV FPAFLQASTK DKATAVDKTK HLLLRENETL KKEKSQLLTE IAHFKALETK 180 LLECLSQFPI HR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-16	8	124	7	129	Heat shock factor protein 1
5d5v_B	2e-16	8	124	7	129	Heat shock factor protein 1
5d5v_D	2e-16	8	124	7	129	Heat shock factor protein 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010242971.1	1e-142	PREDICTED: heat stress transcription factor A-2c-like
TrEMBL	A0A1U7Z653	1e-140	A0A1U7Z653_NELNU; heat stress transcription factor A-2c-like
STRING	XP_010242971.1	1e-141	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62020.1	5e-35	heat shock transcription factor B2A