PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023246-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 598aa MW: 64546.8 Da PI: 6.9904

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023246-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.1	3.5e-09	404	451	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka++L + ++Y++sLq NNU_023246-RA 404 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKATMLDEIINYVQSLQ 451 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-17	398	470	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.92E-11	398	455	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-17	400	468	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.834	400	450	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-6	404	451	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-10	406	456	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 598 aa Download sequence Send to blast
MEKEKLFMNS GSPPPLSYAA SPSSPPPTWH SSSSGMEVQV GELNCSSEQI PNCYVNLNWE 60 NPMDQNSAFE SALRSMVSSP AASNATVPSD PLALRELIGR LGNMGNSGDI SPSSQTLGGS 120 SVSYTGGNNS TNTSCYSTPL NSPPKLNLSM MDHQIRGNLP ILGNSMPTHP GLASFLADTG 180 FVERAARFSC FGSGSFRGLP GQFRFNENEL PYRPAPRLEN GKLSRVSSSQ SLKAAGSHLG 240 GEENKDPSLQ NGVETELRSA SASALASDRK FRRSPDGEDI ANAQELSPSD QIPGGDSSFK 300 GSNDANARKR KAAPRGKAKE LPLSSPHGKD AKAAAEEDPN AKKCKLADST DNENNSVKEK 360 PEPSGSTKTT MGADQKESKE TQKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM 420 KFLQDLVPGC NKVTGKATML DEIINYVQSL QRQVEFLSMK LATVNPRMDF NMESLLSKDI 480 LQSRASLPHT VYPLDSSAST FPFGQHTRQG LPLQSGISNV TDTHCSANPL DAALRQNIGM 540 QLPPVNGFGE SAPQISTFWE DDLQSVVQMG FGQNQSQTAF HPQNFHGSLP TAHMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 598 aa Download sequence Send to blast

MEKEKLFMNS GSPPPLSYAA SPSSPPPTWH SSSSGMEVQV GELNCSSEQI PNCYVNLNWE  60
NPMDQNSAFE SALRSMVSSP AASNATVPSD PLALRELIGR LGNMGNSGDI SPSSQTLGGS  120
SVSYTGGNNS TNTSCYSTPL NSPPKLNLSM MDHQIRGNLP ILGNSMPTHP GLASFLADTG  180
FVERAARFSC FGSGSFRGLP GQFRFNENEL PYRPAPRLEN GKLSRVSSSQ SLKAAGSHLG  240
GEENKDPSLQ NGVETELRSA SASALASDRK FRRSPDGEDI ANAQELSPSD QIPGGDSSFK  300
GSNDANARKR KAAPRGKAKE LPLSSPHGKD AKAAAEEDPN AKKCKLADST DNENNSVKEK  360
PEPSGSTKTT MGADQKESKE TQKPPEPPKD YIHVRARRGQ ATDSHSLAER VRREKISERM  420
KFLQDLVPGC NKVTGKATML DEIINYVQSL QRQVEFLSMK LATVNPRMDF NMESLLSKDI  480
LQSRASLPHT VYPLDSSAST FPFGQHTRQG LPLQSGISNV TDTHCSANPL DAALRQNIGM  540
QLPPVNGFGE SAPQISTFWE DDLQSVVQMG FGQNQSQTAF HPQNFHGSLP TAHMKIEL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00660	PBM	Transfer from Pp3c6_9520	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243164.1	0.0	PREDICTED: transcription factor bHLH62-like
TrEMBL	A0A1U7YYI0	0.0	A0A1U7YYI0_NELNU; transcription factor bHLH62-like
STRING	XP_010243164.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	3e-72	bHLH family protein