PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023462-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 404aa    MW: 44625.1 Da    PI: 7.9113
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023462-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.11.9e-07238260123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    + C++Cgk F+r  nL+ H+r H
  NNU_023462-RA 238 HYCQICGKGFKRDANLRMHMRAH 260
                    68*******************99 PP
2zf-C2H211.10.0012334357123
                    EEETTTT.EEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                    y+C+ C+ k Fs  s+L++H + +
  NNU_023462-RA 334 YVCNRCNqKQFSVLSDLRTHEKHC 357
                    9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.15E-6237263No hitNo description
PROSITE profilePS5015712.632238265IPR007087Zinc finger, C2H2
SMARTSM003550.0028238260IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-6238267IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280240260IPR007087Zinc finger, C2H2
SMARTSM0035575296329IPR015880Zinc finger, C2H2-like
SMARTSM0035522334356IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MISEATSCYQ NVSQGLQMFG MADDVASSSL EESSVAETQS NALLYSFSHL RDKVLQLQSL  60
VGVVISSNQG QPEAAALAIA GMGTLIQEII ITASSMMFTC QQLALGSTGV NNINSHELHQ  120
RHVKVSNSSG EAQPAAAACG REVQMVEAER SFFTAGEHLD WYGDNCNNET HTSNNHKHSI  180
TISSSNTTTT TNNNNDADAG EKELPHGVES NGGLHGFSPK NCEIIELEAA DLLAKFTHYC  240
QICGKGFKRD ANLRMHMRAH GDEYKTSASL SNPMKNANNS EECREYSTKL VARKYYSCPQ  300
EGCRWNRKHA KFQPLKSMIC VKNHYKRSHC PKMYVCNRCN QKQFSVLSDL RTHEKHCGEL  360
KWQCTCGTTF SRKDKLLGHV ALFVGHAPAV SNNKVRFKGA MDRS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243188.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A1U7Z8470.0A0A1U7Z847_NELNU; zinc finger protein STOP1 homolog
STRINGXP_010243188.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-104C2H2 family protein