PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_023477-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 299aa MW: 32232.7 Da PI: 6.1335

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_023477-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+++F++ L H +H NNU_023477-RA 132 YECKTCNRCFPSFQALGGHRASH 154 99**********99999998887 PP
2	zf-C2H2	13.7	0.00019	211	233	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H NNU_023477-RA 211 HECSICGSEFSSGQALGGHMRRH 233 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.94E-9	131	154	No hit	No description
Pfam	PF13912	2.0E-11	131	156	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.367	132	159	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	132	154	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	134	154	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.94E-9	206	233	No hit	No description
Pfam	PF13912	5.4E-12	210	235	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.097	211	238	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.02	211	233	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	213	233	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MEVAEEVMGS NEHTHIVKGK RTKRQRPPSP FAAVAMTTSS SSGGGGEEEE EESGGSGGDE 60 VGFPSPTTSV EFAAESTEEE EDMANCLILL AQGHGRDSPR RIEEGGAMER ASSRRFAEAA 120 TTTTAKAGFY VYECKTCNRC FPSFQALGGH RASHKKPKAM AEDKKSLMAL SPEEDEPQFT 180 HNSIPSSLLP LQIGNRVVYN STTTTTKSRV HECSICGSEF SSGQALGGHM RRHRSAPTTT 240 ISPTPDSPDA AKKPRTVLSL DLNLPAPTED DHREPKFPFA SKQQPSLIFS ASALVDCHY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243202.1	0.0	PREDICTED: zinc finger protein ZAT5
TrEMBL	A0A1U7Z6Q2	0.0	A0A1U7Z6Q2_NELNU; zinc finger protein ZAT5
STRING	XP_010243202.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28200.1	3e-53	C2H2 family protein