PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023606-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family M-type_MADS
Protein Properties Length: 192aa    MW: 22474.9 Da    PI: 8.039
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023606-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.22.9e-101347640
                   HHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
         SRF-TF  6 ksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                   ++++  tf+kR +g+ KK +EL +LCd+e  +i f
  NNU_023606-RA 13 YRKARKTFIKRMQGLKKKMHELTTLCDIEGFIICF 47
                   5667789**********************988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0095159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006610.568147IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-10552IPR002100Transcription factor, MADS-box
PfamPF003198.6E-101448IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAQSRLASES IEYRKARKTF IKRMQGLKKK MHELTTLCDI EGFIICFDGL QQSNEDSAME  60
PIIWPENREK VLELINQYRN LESNTHSRKR EWGLLDFLEK QKKNLEDDLA KWRSKGRTLK  120
FPSMEESGID GFSAEQLKEM GKILELKLEM VKKRQEILKE KQGKGLEERG QIECFNTELY  180
PNYDIGLLGP VS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243128.11e-136PREDICTED: agamous-like MADS-box protein AGL80
TrEMBLA0A1U7YSC71e-135A0A1U7YSC7_NELNU; agamous-like MADS-box protein AGL80
STRINGXP_010243128.11e-135(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-12AGAMOUS-like 103