PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023650-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 305aa    MW: 34036.4 Da    PI: 6.0007
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023650-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12125176254
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS
            HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 
                    +  hn+ Er RR ++Ns++  Lr+llP  +   +skK  s   i+ k+ eYI +L
  NNU_023650-RA 125 KLDHNAKERVRRMKLNSSYLALRSLLPDsR---RSKKkWSAPVIVGKVLEYIPEL 176
                    678*************************65...55555**************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.779123176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-9124181No hitNo description
Gene3DG3DSA:4.10.280.101.7E-11124190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.95E-13125191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-9125177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-6129182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDQPKGLKGL FSSFAGGFVA RDEMLPIPYS HDNDGENSNS MLVQVVETSE DPWIPFEDDI  60
FTGQEDSSSF LHQEDLIMVQ PSVAEGLIAA SDYQNSKEKA GRQRRFQTGK SVVQPGADEE  120
LVVKKLDHNA KERVRRMKLN SSYLALRSLL PDSRRSKKKW SAPVIVGKVL EYIPELESEI  180
ENLTQRKEQM LSIVEKRQIP TQGSPSESKT PTVSVSEVRK GEVIVQICIQ RENSSVFSTL  240
LANAEGEGMQ IVSSSALSVS DDRVCYHLHL HVSGRSPRAD YIAVLRTKIL SWLCGRSSIS  300
DDRNV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243481.10.0PREDICTED: transcription factor bHLH101-like
TrEMBLA0A1U7YZ710.0A0A1U7YZ71_NELNU; transcription factor bHLH101-like
STRINGXP_010243481.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71200.12e-29bHLH family protein