PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023997-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 74aa    MW: 8400.76 Da    PI: 4.9117
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023997-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS49.48.1e-16271111178
           GRAS 111 rvHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                     +Hii f+i+ G+QW++++q+++s++     +p slRi +++++e  s  e + ++++L +f  elg++f++
  NNU_023997-RA   2 FIHIIAFEIGLGGQWASFMQEITSKSrsrnVPPSSLRIIAIVPEE--SFPEANLIKDNLCQFTYELGIRFDI 71 
                    59*********************77755645566*********66..8899999****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098514.217174IPR005202Transcription factor GRAS
PfamPF035142.8E-13271IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    Send to blast
MFIHIIAFEI GLGGQWASFM QEITSKSRSR NVPPSSLRII AIVPEESFPE ANLIKDNLCQ  60
FTYELGIRFD ILIS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255200.12e-36PREDICTED: scarecrow-like protein 15
SwissprotO232102e-15SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A1U7ZT005e-35A0A1U7ZT00_NELNU; scarecrow-like protein 15
STRINGXP_010255200.19e-36(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.19e-18GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]