PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024067-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 570aa MW: 63573.1 Da PI: 6.7394

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024067-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	458	479	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F +k ++++H+++ H NNU_024067-RA 458 HCERCGRTF-QKAEMEKHMKVfH 479 5******.********988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03152	1.3E-47	90	260	IPR004854	Ubiquitin fusion degradation protein UFD1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006511	Biological Process	ubiquitin-dependent protein catabolic process

Sequence ? help Back to Top
Protein Sequence Length: 570 aa Download sequence Send to blast
MDFELRGARE KLEREQKEGK ERARLRLQKE RKAKQEAIRQ REAIEAAQRI RRLDAAEAQL 60 KANQQMEESM LAGKGVILFR ILEAVPYQGY GDKIKLPPSC FTELSDQGAL DKGPMYFQLS 120 KVQQDGSPTT ESTEQQNHGT THSGVLEFTT NEGFVELPPH VWNNLFSSEP PSTPLIEVRY 180 VRLPKGTYAK LQPDGMGFLD MPNHKAVLET SLRQHATLSQ GDVVTVNHGE LSYKLRVLEL 240 KPSSSVSVLE TDIEVDIVGP DLASGRADQH VLVPLTLGKA ESGIVKEGKY NYYKFTVDTD 300 VSEKIASGFA NIEVRIEAET SSGDTDLYVS KHPVIFPNQH QHEWSSHDVG SKVLFLGSKD 360 ENLGAGTYSI GVFGFKGTTK YQIVVGIEDN NSLKVGEQAA ASSSKLDSDS LACRNCKHYI 420 PSRSIALHEA YCFRHNVICQ HAGCGIVLRK EEAENHMHCE RCGRTFQKAE MEKHMKVFHE 480 PLHCPCGVIL EKEEMVHHQS TVCPLRLITC QFCGDMVQAG TSATDIRDRL RGLSEHESVC 540 GSRTALCDSC GRSVMLKEMD IHRIAVHQKN

Sequence ? help Back to Top

Protein Sequence Length: 570 aa Download sequence Send to blast

MDFELRGARE KLEREQKEGK ERARLRLQKE RKAKQEAIRQ REAIEAAQRI RRLDAAEAQL  60
KANQQMEESM LAGKGVILFR ILEAVPYQGY GDKIKLPPSC FTELSDQGAL DKGPMYFQLS  120
KVQQDGSPTT ESTEQQNHGT THSGVLEFTT NEGFVELPPH VWNNLFSSEP PSTPLIEVRY  180
VRLPKGTYAK LQPDGMGFLD MPNHKAVLET SLRQHATLSQ GDVVTVNHGE LSYKLRVLEL  240
KPSSSVSVLE TDIEVDIVGP DLASGRADQH VLVPLTLGKA ESGIVKEGKY NYYKFTVDTD  300
VSEKIASGFA NIEVRIEAET SSGDTDLYVS KHPVIFPNQH QHEWSSHDVG SKVLFLGSKD  360
ENLGAGTYSI GVFGFKGTTK YQIVVGIEDN NSLKVGEQAA ASSSKLDSDS LACRNCKHYI  420
PSRSIALHEA YCFRHNVICQ HAGCGIVLRK EEAENHMHCE RCGRTFQKAE MEKHMKVFHE  480
PLHCPCGVIL EKEEMVHHQS TVCPLRLITC QFCGDMVQAG TSATDIRDRL RGLSEHESVC  540
GSRTALCDSC GRSVMLKEMD IHRIAVHQKN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2yuj_A	6e-28	91	257	40	188	Ubiquitin fusion degradation 1-like
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244126.1	0.0	PREDICTED: uncharacterized protein LOC104588031
TrEMBL	A0A1U7YXB8	0.0	A0A1U7YXB8_NELNU; uncharacterized protein LOC104588031
STRING	XP_010244126.1	0.0	(Nelumbo nucifera)