PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024112-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family NAC
Protein Properties Length: 179aa    MW: 21081.4 Da    PI: 10.053
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024112-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.46.8e-5481361129
            NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew..yfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                    lppGfrFhPtdeel+++yL kkv +++  +  +i evd++k+ePwd+p ++k +ekew  +fF+ +d+ky+tg r+nrat++g Wkatgkdke+++
  NNU_024112-RA   8 LPPGFRFHPTDEELITHYLSKKVVDSSSYA-IAIGEVDLNKCEPWDMPWRAKMGEKEWyfFFFCVKDRKYPTGLRTNRATEAGCWKATGKDKEIYR 102
                    79**********************999776.78***************88889999**656899******************************** PP

            NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129
                     +++lv +kktLvfy+grapkgekt+Wvmheyrle
  NNU_024112-RA 103 -GKTLVEMKKTLVFYRGRAPKGEKTNWVMHEYRLE 136
                    .999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-586160IPR003441NAC domain
PROSITE profilePS5100553.4638160IPR003441NAC domain
PfamPF023655.3E-289135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MEEEHIDLPP GFRFHPTDEE LITHYLSKKV VDSSSYAIAI GEVDLNKCEP WDMPWRAKMG  60
EKEWYFFFFC VKDRKYPTGL RTNRATEAGC WKATGKDKEI YRGKTLVEMK KTLVFYRGRA  120
PKGEKTNWVM HEYRLEGKFS LSNLPKSAKN EWVICKMLNK SLGNPWKKSI HKKKSLPRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-50316810174Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244507.21e-126PREDICTED: NAC domain-containing protein 100-like
SwissprotQ9FLJ26e-97NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A1U7ZB871e-125A0A1U7ZB87_NELNU; NAC domain-containing protein 100-like
STRINGXP_010244507.11e-125(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.13e-99NAC domain containing protein 100
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]