PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024147-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 474aa    MW: 50563.8 Da    PI: 6.1973
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024147-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_180.42.1e-25343406164
                    XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS
         bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 
                    e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL+ kv++L++eN++L+ ele+l +e+akl+se++
  NNU_024147-RA 343 ERELKRQRRKQSNRESARRSRLRKQAECEELQSKVQTLTSENHTLRTELERLAEECAKLTSENK 406
                    89***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.3E-3466160IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165962.9E-10192308No hitNo description
Gene3DG3DSA:1.20.5.1707.9E-19338402No hitNo description
SMARTSM003385.7E-24343407IPR004827Basic-leucine zipper domain
PfamPF001703.5E-22343406IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.794345408IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.13E-12346402No hitNo description
CDDcd147024.88E-24348399No hitNo description
PROSITE patternPS000360350365IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010629Biological Processnegative regulation of gene expression
GO:0090342Biological Processregulation of cell aging
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MERWNEAGEM GLVKTASGLW KMLTNPCRAS YLGNSTLVLV ILVFRVVDLI PWGIPDINVY  60
ILRSEMGSGE DSTPAKPSKP TTSAQETPTT PSYPDWSTPL QAYYGAGATA PPPFFTSSVA  120
SSPAPHPYLW GSQHLMPPYG TPLPYPALYP HGGLYAHPSM AAAQGAAVTT TEAEGKASDG  180
KDRSSAKKSK RSSGKESRKS ASGSANDGAS QSDESGNEGS SSASDENTNQ QDGKKRSFDQ  240
MLADGASAQN NSSAQYSGAT VETTFGTRGQ PLAKLPVSVP GRPVVNMPAA NLNIGMDLWN  300
SSPAGTVPLK TRPNASGVSA SVAQAPVVGR EGVMLDHLSI QDERELKRQR RKQSNRESAR  360
RSRLRKQAEC EELQSKVQTL TSENHTLRTE LERLAEECAK LTSENKSLME ELTQLYGPEA  420
IADLEDNNAS TVLQSTNGDV NGHQQDTSRE NDSACSQKNG TILNSNGKLD SGSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359365RRSRLRK
2359366RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00039PBMTransfer from AT4G36730Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244323.10.0PREDICTED: G-box-binding factor 1-like isoform X2
SwissprotP427745e-98GBF1_ARATH; G-box-binding factor 1
TrEMBLA0A1U7Z1630.0A0A1U7Z163_NELNU; G-box-binding factor 1-like isoform X2
STRINGXP_010244321.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.22e-75G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]