PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024149-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 175aa    MW: 20285.7 Da    PI: 10.6481
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024149-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.21.4e-1856109457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
       Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                    +++++++q++ Le  F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  NNU_024149-RA  56 KRKLSAKQVDLLELNFGSEHKLVSERKDRLASELGLDPRQVAVWFQNRRARWKN 109
                    45899***********************************************95 PP
2HD-ZIP_I/II111.36.4e-3655140287
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                    +kr+ls++qv lLE +F +e+kL +erK +la+eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e++rLe+ev+ L
  NNU_024149-RA  55 RKRKLSAKQVDLLELNFGSEHKLVSERKDRLASELGLDPRQVAVWFQNRRARWKNKKLEEEYSKLKTAHESVVVEKCRLETEVHLL 140
                    8*********************************************************************************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.00150110IPR001356Homeobox domain
SMARTSM003891.6E-1753114IPR001356Homeobox domain
CDDcd000864.10E-1355111No hitNo description
PfamPF000469.7E-1656109IPR001356Homeobox domain
SuperFamilySSF466892.14E-1656117IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-1957117IPR009057Homeodomain-like
PRINTSPR000311.0E-58190IPR000047Helix-turn-helix motif
PROSITE patternPS00027085108IPR017970Homeobox, conserved site
PRINTSPR000311.0E-590106IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MRTNLMNHQV EDQMLLISQL YPSLCTPQLV PGEGETKPRR RRKKNKGEIT DVGTRKRKLS  60
AKQVDLLELN FGSEHKLVSE RKDRLASELG LDPRQVAVWF QNRRARWKNK KLEEEYSKLK  120
TAHESVVVEK CRLETEVHLL LYLLLLLTFL NICGAKAQRS ALRGREGDKK ALRAL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13957RRRKKNKGEITDVGTRKRK
24157RKKNKGEITDVGTRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244326.11e-95PREDICTED: homeobox-leucine zipper protein ATHB-40-like
SwissprotO232087e-56ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A1U7Z9F13e-94A0A1U7Z9F1_NELNU; homeobox-leucine zipper protein ATHB-40-like
STRINGXP_010244326.15e-95(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.13e-58homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]