PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024251-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 352aa    MW: 40336.6 Da    PI: 10.3279
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024251-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.82.6e-15106189190
                    EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                    f+k +++s+v +  +l lp +f+++h  + +++ +++lede+g +++  +   +++++  l++G ++F+ +++L++gD +vF+l++ ++f
  NNU_024251-RA 106 FVKSMVRSHVYSCFWLGLPSSFCKNHL-P-TKELKMVLEDEKGSEYDAIY--IGSRSG--LSGGXRGFALDHKLDDGDALVFELIEPTRF 189
                    89*********************8885.3.45569***************..555555..9**********************9976665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.1E-16100190IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-19101190IPR015300DNA-binding pseudobarrel domain
CDDcd100171.31E-16104190No hitNo description
SMARTSM010194.3E-18106195IPR003340B3 DNA binding domain
PfamPF023626.7E-14106189IPR003340B3 DNA binding domain
PROSITE profilePS508639.728106202IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAKRSGKINT YEEARKQRLR DNKKRFEDLG ILKISKSLSE IASSENKSPV GDVTPNLRKR  60
SRSNSWKSYL ARPFDEVKMA SYEERFHAIE SAEKIRTNLP SGNPSFVKSM VRSHVYSCFW  120
LGLPSSFCKN HLPTKELKMV LEDEKGSEYD AIYIGSRSGL SGGXRGFALD HKLDDGDALV  180
FELIEPTRFK ARPYQIYSFK NDYACHLVFA RLLFLSYLVY IVKASRQPKQ ENTAEIDRKV  240
NSRVHSPKNA VKVNENVYSK AKYSRNLKKA EEVDENGAQS SPHNFQKKEV AKKVGFFKSD  300
NEYDSRKLQA EDWLEVAASD KDSSPRSLQQ GGPTRLFRKR GPSTKLFRKK AF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11424RKQRLRDNKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244587.10.0PREDICTED: B3 domain-containing protein Os05g0481400
SwissprotQ9FHB23e-56Y5828_ARATH; Putative B3 domain-containing protein At5g58280
TrEMBLA0A1U7YYE40.0A0A1U7YYE4_NELNU; B3 domain-containing protein Os05g0481400
STRINGXP_010244587.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-51B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]