PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024265-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MYB_related
Protein Properties Length: 335aa    MW: 36674.3 Da    PI: 9.2554
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024265-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.3e-111466148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqkyl 48
                     +++WT+eE+  l  +++++G+g Wk I r          R+  ++k+++++++
    NNU_024265-RA 14 KQKWTPEEEAALRAGIAKHGPGKWKIILRDPEfshalASRSNVDLKDKYRNVK 66
                     79************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.288962IPR017930Myb domain
SuperFamilySSF466896.46E-151185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.0E-131165IPR009057Homeodomain-like
SMARTSM007171.9E-81368IPR001005SANT/Myb domain
PfamPF002494.4E-81466IPR001005SANT/Myb domain
CDDcd116606.46E-181566No hitNo description
SMARTSM005261.6E-14141206IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467856.53E-15143215IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150424.426143211IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.0E-15145211IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.1E-11147204IPR005818Linker histone H1/H5, domain H15
CDDcd000734.18E-11149203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MAAIIGLKSM GAPKQKWTPE EEAALRAGIA KHGPGKWKII LRDPEFSHAL ASRSNVDLKD  60
KYRNVKVMEN GGGSRERARL LMKWNQQIPK HDDYQKASSD PKNDQMASST EIGSIKDEII  120
DAKPLAISGP EKLAENSSPL KNSISRLEDL ILEAVAILKE RNGSNKSAIA TYIEEKYCRV  180
QKFNKVLSMK LNALVSSGKL IKVNRKYRLP SSQALLEERK PDAPLPPCPI LLEERKPGVL  240
LLEGRPIECK KIEEKDVKPL TKFQIDAELQ KMRNMTAEEV AAAAAKAVAE AEAAMAEAEA  300
AAREAEMAEA DAEAAQAFAE AARLTLKNLT ASAVG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244522.10.0PREDICTED: single myb histone 5-like isoform X1
TrEMBLA0A1U7YVN00.0A0A1U7YVN0_NELNU; single myb histone 5-like isoform X1
STRINGXP_010244522.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-58telomere repeat binding factor 1