PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024307-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 391aa MW: 42954.2 Da PI: 7.8048

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024307-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.5	2.7e-09	143	163	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd+C FaHg NNU_024307-RA 143 ACPDFRK-GNCKRGDSCEFAHG 163 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	7.69E-5	138	167	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.5E-6	138	164	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.277	139	165	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-7	143	163	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.9E-6	143	165	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.643	173	197	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	14	173	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MMIGEVNTPN PTVHVPPWTL FDDSAAGMQF PLPVSGVSMN ASGNANGTVG GGGDYCPFIL 60 GDSLASLQRY LPSNDVDADS DIPGRESDMP INAHTCDEFR MYEFKVRRCA RGRSHDWTEC 120 PYAHPGEKAR RRDPRKFHYS GTACPDFRKG NCKRGDSCEF AHGVFECWLH PARYRTQPCK 180 DGTSCRRRVC FFAHTPEQLR VLPQQSPRAP VSPDSYDGSP LRQALDCYFP KGSLISSPTS 240 TLISPPVSPP SESPPMSPNS PSFSRLLGSN PINDVLTSMR QLQLSKVKSA PSSWGVQVGS 300 GFGSPRGSSL RPGFFSLPST PTRTPTRCGL GYFDAWERGT TVEEEPAMER VESGRDLRAK 360 IYEKLSKENS LDRVESPSPA PDVGWVSELV K

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MMIGEVNTPN PTVHVPPWTL FDDSAAGMQF PLPVSGVSMN ASGNANGTVG GGGDYCPFIL  60
GDSLASLQRY LPSNDVDADS DIPGRESDMP INAHTCDEFR MYEFKVRRCA RGRSHDWTEC  120
PYAHPGEKAR RRDPRKFHYS GTACPDFRKG NCKRGDSCEF AHGVFECWLH PARYRTQPCK  180
DGTSCRRRVC FFAHTPEQLR VLPQQSPRAP VSPDSYDGSP LRQALDCYFP KGSLISSPTS  240
TLISPPVSPP SESPPMSPNS PSFSRLLGSN PINDVLTSMR QLQLSKVKSA PSSWGVQVGS  300
GFGSPRGSSL RPGFFSLPST PTRTPTRCGL GYFDAWERGT TVEEEPAMER VESGRDLRAK  360
IYEKLSKENS LDRVESPSPA PDVGWVSELV K

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244375.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 20
Swissprot	O82199	1e-130	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	A0A1U7ZAX8	0.0	A0A1U7ZAX8_NELNU; zinc finger CCCH domain-containing protein 20
STRING	XP_010244375.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	1e-119	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]