PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024397-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 275aa    MW: 29658.4 Da    PI: 10.0418
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024397-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.54.6e-20139187355
            AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    ++GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  NNU_024397-RA 139 FRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 187
                    8*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.445138195IPR001471AP2/ERF domain
SMARTSM003804.6E-33138201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-29138195IPR001471AP2/ERF domain
PRINTSPR003673.6E-10139150IPR001471AP2/ERF domain
PfamPF008475.7E-14139187IPR001471AP2/ERF domain
CDDcd000184.79E-15139196No hitNo description
SuperFamilySSF541712.81E-21139195IPR016177DNA-binding domain
PRINTSPR003673.6E-10161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGNSEKYATL PFFIGQELFE ASETFRFVKE CPSFYYGSAV FGTQLSFSSL SVAKLDDPVK  60
NEAVSGEVSL GMENNNEFPV LEGIAAVVGP RVLFGNRIGG DGSNGRSGLV SVSAPQRIGT  120
EASNAVAEKR GSVSVQRSFR GVRKRPWGRW SAEIRDRIGR CRHWLGTFDT AEEAARAYDA  180
AARRLRGSKA RTNFEIPSPL PETSASSSCS SSSSLEKKKP KPQSGRTCCV VTSVAHLFSS  240
AAEERKPTKV ELDLKLGLKF SNSTVTAASA LGFPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-16130194671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010244800.10.0PREDICTED: ethylene-responsive transcription factor ERF084
TrEMBLA0A1U7ZBZ50.0A0A1U7ZBZ5_NELNU; ethylene-responsive transcription factor ERF084
STRINGXP_010244800.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-24ERF family protein