PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024398-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 469aa    MW: 51373.9 Da    PI: 6.1034
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024398-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox222.7e-074184512154
                    HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    k +yp++e++++L +++gL+ +q+ +WF N+R +
  NNU_024398-RA 418 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 451
                    569*****************************87 PP
2ELK27.85.6e-10372393122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELKh L+++Y+++++++++E++
  NNU_024398-RA 372 ELKHDLKQGYKEKIVDIREEIL 393
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.0E-19204248IPR005540KNOX1
PfamPF037901.1E-17206247IPR005540KNOX1
SMARTSM012561.5E-27260315IPR005541KNOX2
PfamPF037915.7E-20264314IPR005541KNOX2
PfamPF037892.5E-6372393IPR005539ELK domain
PROSITE profilePS512139.673372392IPR005539ELK domain
SMARTSM011888.6E-4372393IPR005539ELK domain
PROSITE profilePS5007111.677392455IPR001356Homeobox domain
SuperFamilySSF466896.84E-16394458IPR009057Homeodomain-like
SMARTSM003897.3E-11394459IPR001356Homeobox domain
CDDcd000861.63E-11395456No hitNo description
Gene3DG3DSA:1.10.10.601.0E-24399456IPR009057Homeodomain-like
PfamPF059201.5E-17412451IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAFHNHLSHE MALQHFTEQH LGENTAVLRS IIPEQLGQTS SDGTGGAGKE QKDIQRLMIE  60
TGGKPKQQQP PPGQQHHLGG GGGGGGPTWL SNAILRQQNQ YVDGSFLHLQ TNSDSPTSAA  120
SNQWLPRPIL QRNASDVGGG DDVPVSSDSM IAAAMSHNSA DLNANNDNRN SGNNQNPGDN  180
SGGAELAESE AGGGGDGVGS WQNAKYKADI LAHPLYEQLL SAHVACLRIA TPVDQLPRID  240
AQLAQSQHVV AKYSVLGHGN QQLVSDDKEL DQFMTHYVLL LCSFKEQLQQ HVRVHAMEAV  300
MACWELEQSL QSLTGVSPGE GTGATMSDDD DDQADSDANL FDGSLDGTDS MGFGPLIPTE  360
SERSLMERVR QELKHDLKQG YKEKIVDIRE EILRKRRAGK LPGDTTSLLK AWWQSHAKWP  420
YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHSNPSSS TALKSKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-12395459872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1448468RKRNWHSNPSSSTALKSKRKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019051709.10.0PREDICTED: homeobox protein knotted-1-like 13 isoform X1
SwissprotP480000.0KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A1U8PYS30.0A0A1U8PYS3_NELNU; homeobox protein knotted-1-like 13 isoform X1
STRINGXP_010244782.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-174KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]