PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024467-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

M-type_MADS

Protein Properties

Length: 148aa MW: 16708.4 Da PI: 9.9412

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024467-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.5	6.3e-27	65	114	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA EL +LCdaev ++ifsstgkly+++s NNU_024467-RA 65 RIDNSTSRQVTFSKRRNGLLKKARELAILCDAEVGLMIFSSTGKLYDFAS 114 8***********************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.2E-39	56	115	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	31.553	56	116	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	7.06E-28	57	121	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.16E-38	57	119	No hit	No description
PROSITE pattern	PS00350	0	58	112	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-28	58	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-25	65	112	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-28	78	93	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	1.4E-28	93	114	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
VLCKAVDANK RTFKTSQAYD LLYLSLYLWF PPLNVDELKF RIEAGEETLT PEVVRMGRGK 60 IVIRRIDNST SRQVTFSKRR NGLLKKAREL AILCDAEVGL MIFSSTGKLY DFASTRSDQI 120 SSYISLSLSL SPSPSLSLSL SVIYYLKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	1e-19	56	120	1	65	MEF2C
5f28_B	1e-19	56	120	1	65	MEF2C
5f28_C	1e-19	56	120	1	65	MEF2C
5f28_D	1e-19	56	120	1	65	MEF2C
Search in ModeBase

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G14210.1	7e-34	AGAMOUS-like 44