PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024574-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family GRAS
Protein Properties Length: 97aa    MW: 10979.6 Da    PI: 4.6414
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024574-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS78.71.1e-24193207302
           GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvaceg 302
                    +lql++llde++   +   + L+l ksl+Pkvv++ e ea +n+ +Fl+ f  al+yysa+f+sle +l r+s eri +E  llgr+i+ vv  e+
  NNU_024574-RA   1 MLQLYNLLDETTVAME---RALRLAKSLKPKVVTLGEYEAGLNRVDFLNSFKTALQYYSAVFESLEPSLTRDSTERIQIESLLLGRQISGVVEPEE 93 
                    5789999987766666...8************************************************************************9775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098516.408197IPR005202Transcription factor GRAS
PfamPF035143.6E-22193IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MLQLYNLLDE TTVAMERALR LAKSLKPKVV TLGEYEAGLN RVDFLNSFKT ALQYYSAVFE  60
SLEPSLTRDS TERIQIESLL LGRQISGVVE PEEGPMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-28197208304GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010254864.13e-51PREDICTED: scarecrow-like protein 4
SwissprotA0A024B7I01e-35SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLA0A1U8A0096e-50A0A1U8A009_NELNU; scarecrow-like protein 4
STRINGXP_010254864.11e-50(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.18e-37GRAS family protein