PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024584-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

LBD

Protein Properties

Length: 206aa MW: 22482.7 Da PI: 5.1891

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024584-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.3	1.1e-42	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaCk+lrr+C+++Cvlapyfp ++p kf +h++FGasn++k+l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+a+la+ NNU_024584-RA 41 PCAACKILRRRCVEKCVLAPYFPPTEPLKFTTAHRVFGASNIIKFLQELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVNELQAQLAK 136 7*********************************************************************************************** PP DUF260 97 lkee 100 +++e NNU_024584-RA 137 AQAE 140 9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.285	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-43	41	138	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005739	Cellular Component	mitochondrion

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
METSETTTTT TTNTTGTASP LSLSPCSSSP PPLPPPVVIS PCAACKILRR RCVEKCVLAP 60 YFPPTEPLKF TTAHRVFGAS NIIKFLQELP ESQRADAVSS MVYEANARIR DPVYGCAGAI 120 CQLQKQVNEL QAQLAKAQAE LVNMQCQQAN LLALICMEMA QSQQAPLLQQ QPFDNFMITS 180 PHSFQTSNGI FTDDTSLGST WEPLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-45	36	148	6	118	LOB family transfactor Ramosa2.1
5ly0_B	4e-45	36	148	6	118	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010244970.1	1e-151	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	2e-74	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1U7ZCE4	1e-149	A0A1U7ZCE4_NELNU; LOB domain-containing protein 1-like
STRING	XP_010244970.1	1e-150	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-59	LOB domain-containing protein 1