PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024648-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ARF
Protein Properties Length: 599aa    MW: 65514.1 Da    PI: 6.1981
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024648-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.63.2e-25121222199
                    EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
             B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                    f k+ltpsd+++ g +++p+ +a+++        +++ +  t+t++d +g  W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF+  ++++
  NNU_024648-RA 121 FSKILTPSDANNGGGFSVPRFCADSIfpplnykAEPPVQ--TITVTDVHGVMWDFRHIYRGTPRRHLLTTGWSKFVNHKKLVAGDSVVFM--KNQT 212
                    88*********************999****985444444..8************************************************..7799 PP

                    E..EEEEE-S CS
             B3  90 felvvkvfrk 99 
                    +el+v+v+r+
  NNU_024648-RA 213 GELFVGVRRT 222
                    99*****996 PP
2Auxin_resp91.41.5e-30274357183
     Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                    aa+ a  + +FevvY+Pra++++Fvvk+e ve++l++ ++vGmR+kma+etedss+ ++ +Gtv++v   d   W++S Wr+L+
  NNU_024648-RA 274 AAELAGVNRPFEVVYYPRAGSPDFVVKAEAVEESLNIIWMVGMRVKMAVETEDSSRMTWfQGTVSSVASPDHGPWRGSFWRMLQ 357
                    567777899*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-29111228IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-37112231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-22120221No hitNo description
SMARTSM010191.7E-21121223IPR003340B3 DNA binding domain
PROSITE profilePS5086313.084121223IPR003340B3 DNA binding domain
PfamPF023629.0E-23121222IPR003340B3 DNA binding domain
PfamPF065071.3E-27274357IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MALQRVSELR SLDPYIWKAC AGNSVEIPTV GSTVYYFPQG HAEQASSSPD FSSLACVRHM  60
VLCRIVSVMF LANPDTDEVF AKIRLEPLDR SFSGMVRMPP VAAGLSQDGD VEDSEEKILS  120
FSKILTPSDA NNGGGFSVPR FCADSIFPPL NYKAEPPVQT ITVTDVHGVM WDFRHIYRGT  180
PRRHLLTTGW SKFVNHKKLV AGDSVVFMKN QTGELFVGVR RTARSSGSMD CVRWNYHVGS  240
VASPIVKMEE GFGSGEGFSR SSRGRVPAES VVEAAELAGV NRPFEVVYYP RAGSPDFVVK  300
AEAVEESLNI IWMVGMRVKM AVETEDSSRM TWFQGTVSSV ASPDHGPWRG SFWRMLQVNW  360
DEPEVLQNVK RVSPWQVELV AATPPLQTPF PPTKKLRVPQ NPELLTDGGA LFYPMTGFNS  420
MMGNLSPSLF NCNTFPAGMQ GARHDPICVP NLSNFISSNN HQVLCSENIC SNNVAPKLSC  480
ISTELSIGSS SQSDNSSPHS QNSVHFFGTE TFGSRNSNLT TKATVSSFQL FGKIIQTKQP  540
SESGIDDIGC MENDGGKGYN VTEAVANPLV PALSHPYNKL YDGVDIQYQG VSAVEACSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A7e-701637855388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245064.10.0PREDICTED: auxin response factor 17
SwissprotQ84WU61e-171ARFQ_ARATH; Auxin response factor 17
TrEMBLA0A1U7ZB880.0A0A1U7ZB88_NELNU; Auxin response factor
STRINGXP_010245064.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-162auxin response factor 17
Publications ? help Back to Top
  1. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  2. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  5. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  6. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]