PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024685-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 807aa    MW: 88613.6 Da    PI: 6.4092
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024685-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.51.5e-2089144156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  NNU_024685-RA  89 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 144
                    688899***********************************************998 PP

2START159.23.2e-502895142206
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 
                    la +a++el+k+  a++p+Wv+ss  + ++evl  +e ++              +++ea r+s++v+m++ +lv  +ld + +W e ++    ka 
  NNU_024685-RA 289 LAMTAMDELLKMCHATDPLWVRSS--NGSKEVLNLEEHARMfpwplnvkqqsseFRTEATRDSALVIMNSITLVDAFLDAN-KWMELFPsivsKAR 381
                    7889********************..6667777766666667888889999999***************************.************** PP

                    EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
          START  81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                    t++ i+sg      g l+lm+aelq+ splvp R+  f+Ry++q  ++g+w+ivd  vd+  ++  +  + R +++pSg++i++++ng+s+vtw+e
  NNU_024685-RA 382 TVQIITSGvsghlsGSLHLMYAELQVQSPLVPtREAHFLRYCQQnVEEGTWAIVDFPVDNFHDNL-QTCFPRYRRRPSGCIIQDMPNGYSRVTWIE 476
                    ********************************************99*****************98.9***************************** PP

                    -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    h++ +++ +h +++ +v+sgla+ga++w+a lqrqce+
  NNU_024685-RA 477 HAEIEDKPVHKIFNDFVNSGLAFGAQRWLAVLQRQCER 514
                    ************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-2074147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-2276140IPR009057Homeodomain-like
PROSITE profilePS5007117.21686146IPR001356Homeobox domain
SMARTSM003892.7E-1987150IPR001356Homeobox domain
PfamPF000465.1E-1889144IPR001356Homeobox domain
CDDcd000865.13E-1989147No hitNo description
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PROSITE profilePS5084846.117279517IPR002913START domain
SuperFamilySSF559619.42E-34282516No hitNo description
CDDcd088751.24E-120283513No hitNo description
SMARTSM002344.5E-37288514IPR002913START domain
PfamPF018524.5E-42289514IPR002913START domain
SuperFamilySSF559615.26E-18551774No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MYGGGDCQVL SSIGGNVVSS DPLFSSPIRN SNLNFMSNLP FHPFSAIIPK EEVEVVRGKE  60
EEMERSGSGS GHVEGVSGDE QENKQQPKKK RYHRHTARQI QEMEALFKEC PHPDDKQRMK  120
LSQELGLKPR QVKFWFQNRR TQMKAQQDRA DNVLLRAENE NLKNENFRLQ AALRNVICPN  180
CGGPAILGEM SFDEQHLRLE NARLKEELER ITCVASRYSS RPLQALPPAG PHLMLPSLDL  240
DMGIYSRHFH EPINNCTDII PVPPMLENQF IAAGGCMIME QEKPLALELA MTAMDELLKM  300
CHATDPLWVR SSNGSKEVLN LEEHARMFPW PLNVKQQSSE FRTEATRDSA LVIMNSITLV  360
DAFLDANKWM ELFPSIVSKA RTVQIITSGV SGHLSGSLHL MYAELQVQSP LVPTREAHFL  420
RYCQQNVEEG TWAIVDFPVD NFHDNLQTCF PRYRRRPSGC IIQDMPNGYS RVTWIEHAEI  480
EDKPVHKIFN DFVNSGLAFG AQRWLAVLQR QCERFASLMA RNISDLGVIP SPEARKNMMK  540
LAHRMIRTFC INVSTSGGHS WTALSDSVDD TVRITTRKNT EAGQPNGMIL CAVSTTWLPF  600
PHHQVFDLLR DERRRSQLDV LSGGNSLHEV AHIANGSHPG NCISLLRINA SSNSSQNVEL  660
MLQESCTDPS GSLIVYTTMD VDAVQLAMSG EDPSYIPLLP IGFVVFPVGS AGVGGSISCN  720
GSGIPSEGAN GPSPGCLLTV GLQVLASTVP SAKLNLSSVT AINNHICNTV QQINAALSNS  780
SSTDGGVAGA GVGGGGGGST EPAAASS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245210.10.0PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1
RefseqXP_010245211.10.0PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1
RefseqXP_010245212.10.0PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1U7YXD90.0A0A1U7YXD9_NELNU; homeobox-leucine zipper protein ROC3-like isoform X1
STRINGXP_010245210.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7