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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | NNU_024685-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 807aa MW: 88613.6 Da PI: 6.4092 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 64.5 | 1.5e-20 | 89 | 144 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
+++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
NNU_024685-RA 89 KKRYHRHTARQIQEMEALFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 144
688899***********************************************998 PP
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| 2 | START | 159.2 | 3.2e-50 | 289 | 514 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kae 80
la +a++el+k+ a++p+Wv+ss + ++evl +e ++ +++ea r+s++v+m++ +lv +ld + +W e ++ ka
NNU_024685-RA 289 LAMTAMDELLKMCHATDPLWVRSS--NGSKEVLNLEEHARMfpwplnvkqqsseFRTEATRDSALVIMNSITLVDAFLDAN-KWMELFPsivsKAR 381
7889********************..6667777766666667888889999999***************************.************** PP
EEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
START 81 tlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
t++ i+sg g l+lm+aelq+ splvp R+ f+Ry++q ++g+w+ivd vd+ ++ + + R +++pSg++i++++ng+s+vtw+e
NNU_024685-RA 382 TVQIITSGvsghlsGSLHLMYAELQVQSPLVPtREAHFLRYCQQnVEEGTWAIVDFPVDNFHDNL-QTCFPRYRRRPSGCIIQDMPNGYSRVTWIE 476
********************************************99*****************98.9***************************** PP
-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
h++ +++ +h +++ +v+sgla+ga++w+a lqrqce+
NNU_024685-RA 477 HAEIEDKPVHKIFNDFVNSGLAFGAQRWLAVLQRQCER 514
************************************97 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF46689 | 5.01E-20 | 74 | 147 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 6.9E-22 | 76 | 140 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS50071 | 17.216 | 86 | 146 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 2.7E-19 | 87 | 150 | IPR001356 | Homeobox domain |
| Pfam | PF00046 | 5.1E-18 | 89 | 144 | IPR001356 | Homeobox domain |
| CDD | cd00086 | 5.13E-19 | 89 | 147 | No hit | No description |
| PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
| PROSITE profile | PS50848 | 46.117 | 279 | 517 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 9.42E-34 | 282 | 516 | No hit | No description |
| CDD | cd08875 | 1.24E-120 | 283 | 513 | No hit | No description |
| SMART | SM00234 | 4.5E-37 | 288 | 514 | IPR002913 | START domain |
| Pfam | PF01852 | 4.5E-42 | 289 | 514 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 5.26E-18 | 551 | 774 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 807 aa Download sequence Send to blast |
MYGGGDCQVL SSIGGNVVSS DPLFSSPIRN SNLNFMSNLP FHPFSAIIPK EEVEVVRGKE 60 EEMERSGSGS GHVEGVSGDE QENKQQPKKK RYHRHTARQI QEMEALFKEC PHPDDKQRMK 120 LSQELGLKPR QVKFWFQNRR TQMKAQQDRA DNVLLRAENE NLKNENFRLQ AALRNVICPN 180 CGGPAILGEM SFDEQHLRLE NARLKEELER ITCVASRYSS RPLQALPPAG PHLMLPSLDL 240 DMGIYSRHFH EPINNCTDII PVPPMLENQF IAAGGCMIME QEKPLALELA MTAMDELLKM 300 CHATDPLWVR SSNGSKEVLN LEEHARMFPW PLNVKQQSSE FRTEATRDSA LVIMNSITLV 360 DAFLDANKWM ELFPSIVSKA RTVQIITSGV SGHLSGSLHL MYAELQVQSP LVPTREAHFL 420 RYCQQNVEEG TWAIVDFPVD NFHDNLQTCF PRYRRRPSGC IIQDMPNGYS RVTWIEHAEI 480 EDKPVHKIFN DFVNSGLAFG AQRWLAVLQR QCERFASLMA RNISDLGVIP SPEARKNMMK 540 LAHRMIRTFC INVSTSGGHS WTALSDSVDD TVRITTRKNT EAGQPNGMIL CAVSTTWLPF 600 PHHQVFDLLR DERRRSQLDV LSGGNSLHEV AHIANGSHPG NCISLLRINA SSNSSQNVEL 660 MLQESCTDPS GSLIVYTTMD VDAVQLAMSG EDPSYIPLLP IGFVVFPVGS AGVGGSISCN 720 GSGIPSEGAN GPSPGCLLTV GLQVLASTVP SAKLNLSSVT AINNHICNTV QQINAALSNS 780 SSTDGGVAGA GVGGGGGGST EPAAASS |
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor. {ECO:0000250}. | |||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_010245210.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
| Refseq | XP_010245211.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
| Refseq | XP_010245212.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
| Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
| TrEMBL | A0A1U7YXD9 | 0.0 | A0A1U7YXD9_NELNU; homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
| STRING | XP_010245210.1 | 0.0 | (Nelumbo nucifera) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G46880.1 | 0.0 | homeobox-7 | ||||




