PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024692-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

FAR1

Protein Properties

Length: 960aa MW: 109240 Da PI: 7.3951

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024692-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	93.8	2.1e-29	75	163	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA e+GFs rks+++ks+r+gei+ r f+Cs +g+r+ ++ + ++++r r+e+rtgCka++ ++++k g+w+v+++++eHnH+l+ NNU_024692-RA 75 FYNRYAIEMGFSARKSSTRKSQRTGEIIGRCFCCSLQGYRNASSVRVVERKRLRPESRTGCKAMMSIRRKKGGRWVVSQVVKEHNHALT 163 9*******************************************9**************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.1E-26	75	163	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.3E-27	283	377	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.385	565	601	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.0E-7	570	597	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.1E-6	576	603	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 960 aa Download sequence Send to blast
MEFGSQAVCN DEEDAANCFD GDKENHDHGE EDLRNLNGNS NGKEQEGYAM KENENNELCP 60 SIGMEFESQE EAYVFYNRYA IEMGFSARKS STRKSQRTGE IIGRCFCCSL QGYRNASSVR 120 VVERKRLRPE SRTGCKAMMS IRRKKGGRWV VSQVVKEHNH ALTSPSKRHK LRSRRKIIEW 180 EVLENMRSEG VGTNLIMNFM ALEAMGNCNV GFTIRETKNF LSTRRQRELR KGDVATILDY 240 LERQQINNPS FFSSIQLDSN GQMTNFFWAD ARSRMDYYYF GDIVCIDPTY GTDKYSIPFV 300 PIMGVNHHCQ TILFGSALLF DETEESFAWV LATLMRAMGG QQPKVILTDQ ISAIGGAVAR 360 VMPGTRHCFC LWNIMQNATK YIPHAFSTRN GFTRDFTSCL LYQGDTVEEF ESIWKEMIER 420 YNLRGNPWAM KLYGNREKWA SVYVRDVFCG PMYTTQFGES IHAYFDGYMK RHMPLYEFVK 480 QHDRAVLARR QAENDEDFET NQKMPTLRVG MNIEEEAAQI YTREILQKFQ DELIQALNYH 540 HEKMDEDQTK FTYSVWKKEY EQTRHIVTFD SSNNNANCSC HLFEFTGYLC RHILKIFVVI 600 DVQNLPCQYI LKRWTRDAKF GPVVDDQAQA IQGHCRDPVS LRYFFLYRLA TNIAAKAAAN 660 NEVYRVAMNG LHTSLKEVEG TLKRLSIGSV EHIKEFESTH GDNISHESPG NCLAEQGPLL 720 DPPNVKHKGR PGRKKASLDN QLNRKITPND NIQVSELSMQ SFGVIGGESG IQQPQAKVGQ 780 SVETSLLGTS DQPEDSIRTT NVMNCHQTRN LVNPYMIQSG GSHTYSPCTT TNLELDQSSQ 840 GFNVAGVQHS PLVMVGHQLH RLSPESSVAG QQRQQLIISR HDDIACNGFY PQQHSGASFV 900 GHHPFGQRTA PAFVLNPHQL HGIMNIDLND PSQKGDGRSI VKCEATRSAP ARGWLSKQPA

Sequence ? help Back to Top

Protein Sequence Length: 960 aa Download sequence Send to blast

MEFGSQAVCN DEEDAANCFD GDKENHDHGE EDLRNLNGNS NGKEQEGYAM KENENNELCP  60
SIGMEFESQE EAYVFYNRYA IEMGFSARKS STRKSQRTGE IIGRCFCCSL QGYRNASSVR  120
VVERKRLRPE SRTGCKAMMS IRRKKGGRWV VSQVVKEHNH ALTSPSKRHK LRSRRKIIEW  180
EVLENMRSEG VGTNLIMNFM ALEAMGNCNV GFTIRETKNF LSTRRQRELR KGDVATILDY  240
LERQQINNPS FFSSIQLDSN GQMTNFFWAD ARSRMDYYYF GDIVCIDPTY GTDKYSIPFV  300
PIMGVNHHCQ TILFGSALLF DETEESFAWV LATLMRAMGG QQPKVILTDQ ISAIGGAVAR  360
VMPGTRHCFC LWNIMQNATK YIPHAFSTRN GFTRDFTSCL LYQGDTVEEF ESIWKEMIER  420
YNLRGNPWAM KLYGNREKWA SVYVRDVFCG PMYTTQFGES IHAYFDGYMK RHMPLYEFVK  480
QHDRAVLARR QAENDEDFET NQKMPTLRVG MNIEEEAAQI YTREILQKFQ DELIQALNYH  540
HEKMDEDQTK FTYSVWKKEY EQTRHIVTFD SSNNNANCSC HLFEFTGYLC RHILKIFVVI  600
DVQNLPCQYI LKRWTRDAKF GPVVDDQAQA IQGHCRDPVS LRYFFLYRLA TNIAAKAAAN  660
NEVYRVAMNG LHTSLKEVEG TLKRLSIGSV EHIKEFESTH GDNISHESPG NCLAEQGPLL  720
DPPNVKHKGR PGRKKASLDN QLNRKITPND NIQVSELSMQ SFGVIGGESG IQQPQAKVGQ  780
SVETSLLGTS DQPEDSIRTT NVMNCHQTRN LVNPYMIQSG GSHTYSPCTT TNLELDQSSQ  840
GFNVAGVQHS PLVMVGHQLH RLSPESSVAG QQRQQLIISR HDDIACNGFY PQQHSGASFV  900
GHHPFGQRTA PAFVLNPHQL HGIMNIDLND PSQKGDGRSI VKCEATRSAP ARGWLSKQPA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	144	RKRLRPESRTGCKAMMSIRRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245233.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_010245234.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1U7YZY6	0.0	A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_010245233.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-148	FAR1-related sequence 5