PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

NNU_024739-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 77aa MW: 8883.69 Da PI: 4.6236

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024739-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	36.7	9.8e-12	22	53	1	32
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd++l+++v+ +G g+W++ ar+ g NNU_024739-RA 22 RGPWTVEEDLILLNYVANHGEGRWNSLARCSG 53 89***************************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.252	17	71	IPR017930	Myb domain
SuperFamily	SSF46689	2.76E-9	18	53	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.3E-12	18	54	IPR009057	Homeodomain-like
Pfam	PF00249	6.0E-9	22	51	IPR001005	SANT/Myb domain
CDD	cd00167	1.02E-5	24	51	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 77 aa Download sequence Send to blast
MDANGRSCSS GTQSEEEIDL RRGPWTVEED LILLNYVANH GEGRWNSLAR CSGRVEAWDW 60 FESQEFLARS KVHEQNK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salt (NaCl). {ECO:0000269\|PubMed:16463103}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270853.1	4e-28	PREDICTED: transcription factor MYB108
Swissprot	Q9FGY3	7e-17	MYB78_ARATH; Transcription factor MYB78
TrEMBL	A0A1U8B442	1e-26	A0A1U8B442_NELNU; transcription factor MYB108
STRING	XP_010270853.1	2e-27	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G49620.1	3e-19	myb domain protein 78

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]