PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024742-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family ERF
Protein Properties Length: 279aa    MW: 30600.7 Da    PI: 4.8553
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024742-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.12.5e-192575256
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  NNU_024742-RA 25 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 75
                   59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.72E-332484No hitNo description
Gene3DG3DSA:3.30.730.102.2E-322583IPR001471AP2/ERF domain
SMARTSM003801.2E-382588IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-232583IPR016177DNA-binding domain
PROSITE profilePS5103222.9322582IPR001471AP2/ERF domain
PRINTSPR003674.2E-112637IPR001471AP2/ERF domain
PfamPF008471.2E-122675IPR001471AP2/ERF domain
PRINTSPR003674.2E-114864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MMNRLGQDGR NLFRPPAPPA TTTKLYRGVR QRHWGKWVAE IRLPRNRTRL WLGTFDTAED  60
AALAYDREAF KLRGENARLN FPELFLGREG AATAPTSSSS SLLTPNENPS QPRRYQQQRQ  120
QPQPQTAPQG LNLKAEPVET EPMPLDNPNE DDPEKPSFQG TSPSGVGSGS SGVTAISEAQ  180
ALTPASVTGE GLSGSPELAW GDMPEAWFNA IQAGWGPGSP VWDDIDTTNN LFLQSHLPIP  240
TSHHQESQAV DFQNQLDNPS SSSSSSSCPM KMFFWKDGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-212482463ATERF1
3gcc_A6e-212482463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245316.10.0PREDICTED: ethylene-responsive transcription factor ERF054
TrEMBLA0A1U7Z0400.0A0A1U7Z040_NELNU; ethylene-responsive transcription factor ERF054
STRINGXP_010245316.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-42ERF family protein