PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024936-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 173aa    MW: 20039.8 Da    PI: 9.8523
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024936-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox573.3e-181570156
                   TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                   +r++ +++++q++ Le+ F +++++  e++ +LA+ lgL  rqV +W+qN+Ra++k
  NNU_024936-RA 15 KRNKKRLSQDQVRLLETSFSNEKKLEPERKIQLARDLGLHPRQVAIWYQNKRARWK 70
                   688999*************************************************9 PP
2HD-ZIP_I/II112.33.2e-3617108293
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                    +k+rls++qv+lLE+sF++e+kLeperK +lar+Lgl+prqva+W+qn+RAR+kt+ lE dy+aL+ ++++  ++++rLeke+ +Lr+el++
  NNU_024936-RA  17 NKKRLSQDQVRLLETSFSNEKKLEPERKIQLARDLGLHPRQVAIWYQNKRARWKTQSLELDYKALQLKLESALADKRRLEKEMLRLRQELDK 108
                    79**************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.0381272IPR001356Homeobox domain
SuperFamilySSF466891.14E-171380IPR009057Homeodomain-like
SMARTSM003891.8E-161476IPR001356Homeobox domain
PfamPF000461.9E-151570IPR001356Homeobox domain
CDDcd000868.25E-131573No hitNo description
Gene3DG3DSA:1.10.10.602.7E-181679IPR009057Homeodomain-like
PRINTSPR000313.7E-54352IPR000047Helix-turn-helix motif
PROSITE patternPS0002704770IPR017970Homeobox, conserved site
PRINTSPR000313.7E-55268IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDFFLQSENQ KSPPKRNKKR LSQDQVRLLE TSFSNEKKLE PERKIQLARD LGLHPRQVAI  60
WYQNKRARWK TQSLELDYKA LQLKLESALA DKRRLEKEML RLRQELDKAQ EMLMVSNSTP  120
PTALSSISTS CDEDGSSGLP RSSYWENSGV IQAEELYAFL MGADAQASKF KWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11320PKRNKKRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245574.11e-123PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBLA0A1U7Z4911e-122A0A1U7Z491_NELNU; homeobox-leucine zipper protein ATHB-52-like
STRINGXP_010245574.11e-123(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-33homeobox protein 52