PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024957-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25140.5 Da    PI: 8.4684
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024957-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.72.8e-272978150
                   S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
         SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                   krien+  rqvtf+kRr+g+lKKA+ELSvLCda+v +iifs++gklye +
  NNU_024957-RA 29 KRIENTVHRQVTFCKRRAGLLKKAKELSVLCDADVGIIIFSTKGKLYELA 78
                   79*********************************************965 PP
2K-box631.2e-2111019218100
          K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                    ++e++ Lk+ei+ Lq+ +    G ++e++sl eL+ Le++Le  + +iRs K+++++e+ie l++ke  l+ +n++L+ k++e
  NNU_024957-RA 110 SEEITSLKEEIQLLQKGLGYTFGGGVETMSLDELHALEKHLEVCICHIRSIKMQIMFEEIEVLKNKEGILKAANEYLHGKIQE 192
                    79******************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.3332181IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-282194IPR002100Transcription factor, MADS-box
SMARTSM004326.1E-362180IPR002100Transcription factor, MADS-box
CDDcd002654.85E-392296No hitNo description
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-282343IPR002100Transcription factor, MADS-box
PfamPF003198.3E-243076IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-284358IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-285879IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.936106196IPR002487Transcription factor, K-box
PfamPF014863.7E-19110190IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MYIRHAIECW RDLKLAKTIS MARGKVQMKR IENTVHRQVT FCKRRAGLLK KAKELSVLCD  60
ADVGIIIFST KGKLYELATK GNMQGLIERY MKSTRAVQIE DTGGRLTLES EEITSLKEEI  120
QLLQKGLGYT FGGGVETMSL DELHALEKHL EVCICHIRSI KMQIMFEEIE VLKNKEGILK  180
AANEYLHGKI QEQNGMFDLP SPMITGFPYP LTIQNEIFQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-142190169MEF2C
5f28_B2e-142190169MEF2C
5f28_C2e-142190169MEF2C
5f28_D2e-142190169MEF2C
6byy_A1e-142190169MEF2 CHIMERA
6byy_B1e-142190169MEF2 CHIMERA
6byy_C1e-142190169MEF2 CHIMERA
6byy_D1e-142190169MEF2 CHIMERA
6bz1_A2e-142190169MEF2 CHIMERA
6bz1_B2e-142190169MEF2 CHIMERA
6bz1_C2e-142190169MEF2 CHIMERA
6bz1_D2e-142190169MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245525.11e-145PREDICTED: agamous-like MADS-box protein AGL12
SwissprotQ2QW551e-70MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A1U7Z0L21e-144A0A1U7Z0L2_NELNU; agamous-like MADS-box protein AGL12
STRINGXP_010245525.11e-144(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-68AGAMOUS-like 12