PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024965-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 545aa    MW: 59412.6 Da    PI: 5.6814
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024965-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.34.4e-16338384455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
            HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  NNU_024965-RA 338 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 384
                    6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.109.8E-21332392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.14E-20332400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.146334383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.06E-16337388No hitNo description
PfamPF000101.3E-13338384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006783Biological Processheme biosynthetic process
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009959Biological Processnegative gravitropism
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0010161Biological Processred light signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0010313Molecular Functionphytochrome binding
GO:0042802Molecular Functionidentical protein binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MRRQVAASGI VDGATKEGYF KNLLEKMNHC VPDFEIEDDA IPAPSGLYRQ KKSTLREEEV  60
VELLWQNGQV VMQSQRSSRK SPPKFPFEDA VIPAGGSPAG EIRATTAAAA AEEEATNQLF  120
MQEDEMAAWL HYPLEDTFEQ NFCADLLYSA ASGGSQIPEE RRPENRPTAV QRPPIPPTTH  180
AELDSAAKFQ QLMHFSVPRE KNESQPSSSN KPVRESTVVD SSVTPAVGPR SAVAQTSRTT  240
AQFYSGNLRS GSMSGDGTAA ADGARELVSC DQTMTSSSGA SGASAEPSTK PPTDDRKRKS  300
REQDDNECQS EDAEFESVET KKQVRGSTSA RRSRAAEVHN LSERRRRDRI NEKMKALQEL  360
IPRCNKSDKA SMLDEAIEYL KSLQLQVQML SMGCGMVPMM FPGVQQYMST MGMGMGMGMG  420
MDMGMNRPIL PFPSVLAGST MPTPAGAAHM GPRLPMPAFH LPSVSTADLS RIRPTSQSDP  480
ALNSTGMTNP NQMLVPNFTD PYQHYFSLHQ MQVAPHQIQA TAQPSASKGV ETTENHQSGS  540
ACEVL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1342347ERRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00074ChIP-chipTransfer from AT2G20180Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245662.10.0PREDICTED: transcription factor PIF1-like isoform X3
TrEMBLA0A1U7Z0Y00.0A0A1U7Z0Y0_NELNU; transcription factor PIF1-like isoform X3
STRINGXP_010245660.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-73phytochrome interacting factor 3-like 5