PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024976-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family B3
Protein Properties Length: 711aa    MW: 79338.9 Da    PI: 4.8236
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024976-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.18.8e-20601693291
                    EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
             B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                    +kvl++sdv+++gr+vlpkk ae+h  +++ + ++ + +ed  ++r+W++++++  ++ks++y+l+ ++ +Fv++ngL+egDf+v++   + ++++
  NNU_024976-RA 601 QKVLKQSDVGNLGRIVLPKKEAETHlpELEARDGISIAMEDiGTSRVWNMRYRFwpNNKSRMYLLE-NTGDFVRSNGLQEGDFIVIYS--DtKCGK 693
                    79*************************999999********7778*******99777777777777.*******************93..336664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.7E-27595694IPR015300DNA-binding pseudobarrel domain
CDDcd100151.00E-34598695No hitNo description
SuperFamilySSF1019361.16E-22599692IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.1E-18600699IPR003340B3 DNA binding domain
PROSITE profilePS5086310.616600711IPR003340B3 DNA binding domain
PfamPF023624.6E-16601693IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009657Biological Processplastid organization
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0031930Biological Processmitochondria-nucleus signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001076Molecular Functiontranscription factor activity, RNA polymerase II transcription factor binding
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 711 aa     Download sequence    Send to blast
MDMQLHEEDL HGGLGDELER MNSIGDPNPQ FGNMEEVREG GGGGGAGGTE DGDFWLDRGT  60
EDMLNVDDPF FYGHFPPLPD FPCVSSSSSQ SSSYTPAAVH AVPCSSSSSC STSASSSSSS  120
SSSSTSWAIV RSDAEEGAER NDDHQQQXEQ VDALRPPFLS ADSMEIPPSF DVDCMDVMEE  180
FGDMDLLDTT EMWDPSTVFP FLNPEEDQEE QQEMRQQQQQ QQLLMQGDDG EERAMAQAND  240
EEGQGKKPSD DLAKLFFEWL KSNKESISAE DLRNIKLKRS TIDCAAQRLG GGKEGMKRLL  300
KLILEWVQNH HLQRRRMRGE DSAFPCQQTQ LGFQNSNPNP NINPILSCNP ISPDSTACFS  360
PATPWIPQPP YVPEPTATGA GFPPMVGFAN GGPFSQGING YSPPTDYRML DPSVTWPSSN  420
FTLSPRYNSF TDHHLPTAPP THQVFAPFAN QYPCQPFQGS SDRLLRMGSS ATKEARKKRM  480
ARQRRFLSHH RSLNHQQQHP SPNTDLHAKL PSEGNCANTA QTNPENWMFW SSSASVPTVS  540
PAHLLPEAPP QSADRPPMQP QNYQRQITSD RRQVAISSGV MHVIGFGQGW KPEKNLRFLL  600
QKVLKQSDVG NLGRIVLPKK EAETHLPELE ARDGISIAME DIGTSRVWNM RYRFWPNNKS  660
RMYLLENTGD FVRSNGLQEG DFIVIYSDTK CGKYLSNKWD GFSLLVMEML R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A1e-355966951100B3 domain-containing transcription factor FUS3
6j9b_D1e-355966951100B3 domain-containing transcription factor FUS3
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00083PBMTransfer from AT3G24650Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245692.10.0PREDICTED: B3 domain-containing transcription factor ABI3
TrEMBLA0A1U7ZE450.0A0A1U7ZE45_NELNU; B3 domain-containing transcription factor ABI3
STRINGXP_010245692.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24650.11e-129B3 family protein