PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025008-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TALE
Protein Properties Length: 371aa    MW: 42459.5 Da    PI: 6.3829
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025008-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-092983332055
                    HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
       Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                    +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  NNU_025008-RA 298 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 333
                    4679*****************************885 PP
2ELK361.5e-12253274122
            ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                    ELK++Ll+KYsgyL+sLkqE+s
  NNU_025008-RA 253 ELKNHLLKKYSGYLSSLKQELS 274
                    9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-21110154IPR005540KNOX1
PfamPF037904.9E-22111152IPR005540KNOX1
SMARTSM012566.0E-28161212IPR005541KNOX2
PfamPF037914.4E-24166210IPR005541KNOX2
PROSITE profilePS5121311.243253273IPR005539ELK domain
PfamPF037897.3E-10253274IPR005539ELK domain
SMARTSM011881.0E-6253274IPR005539ELK domain
PROSITE profilePS5007113.038273336IPR001356Homeobox domain
SuperFamilySSF466898.13E-20274348IPR009057Homeodomain-like
SMARTSM003896.6E-13275340IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-27278338IPR009057Homeodomain-like
CDDcd000868.44E-12285337No hitNo description
PfamPF059201.4E-16293332IPR008422Homeobox KN domain
PROSITE patternPS000270311334IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MEYNQLSENN STRGSFMYTT PVLAPNSSIY GRTSSNSNVT HQQTQLPVNT FHLQSGDCYP  60
SEAPPGPIVK TEASSSQQIQ EFQYPLVRGG HQTMQHHQQG GVNGSSNEVD TIKAKIAAHP  120
QYSNLLEAYM ECQKIGAPPE VVARLTAVRR DFETQQRSTV TCRGASTDPE LDQFMEAYYD  180
MLVKYREELT RPLQEAMEFM RRIEAQLNTL SHGPVRIFSA DKYEEVGSSE EEQENSGGEM  240
ELPDIDPRAE DRELKNHLLK KYSGYLSSLK QELSKKKKKG KLPKEARQKL LNWWELHYKW  300
PYPSETEKVA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDGLHP QNAALYMEGH  360
FMSDGSYRLG P
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245637.10.0PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041351e-166KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA0A1U7ZE000.0A0A1U7ZE00_NELNU; homeobox protein knotted-1-like 2
STRINGXP_010245637.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-118KNOTTED-like from Arabidopsis thaliana